Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq335 91.5 1e-13 seq963 82.4 7e-11 seq813 82.4 7e-11 >seq335 Length=1426492 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 ||||| |||| | ||||| || || || || || ||||||||||| ||| || | Sbjct 751119 CCAGCAAAGATAAGCCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 751178 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | |||| |||||| | | |||||||||| || | ||||||||||||||| Sbjct 751179 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 751238 Query 127094 GTTTTTACAAAAATCTGCAT 127113 ||||| || ||||| ||||| Sbjct 751239 GTTTTCACGAAAATTTGCAT 751258 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| |||| | ||||||||||| ||||| || || |||||||| ||| || Sbjct 751468 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 751527 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | |||| |||||| | | |||||||||| || | || ||||||||||| Sbjct 751528 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCAGG 751587 Query 127094 GTTTTTACAAAAATCTGCATGG 127115 ||||| ||||| || ||||||| Sbjct 751588 GTTTTGACAAAGATTTGCATGG 751609 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| |||| | ||||||||||| ||||| || || ||||||| | ||| | | ||| Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGT-CTTGAATCTTTGC 750397 Query 127034 -TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 |||| | ||||| |||||| | | || ||||||| || | || ||||||||||| Sbjct 750398 TTTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAG 750457 Query 127093 AGTTTTTACAAAAATCTGCATG 127114 || || ||||| || |||||| Sbjct 750458 CGTCTTCACAAAGATTTGCATG 750479 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 ||||| || || || || || ||||||||||| ||| || ||||| | |||| | Sbjct 750007 CGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATG 750066 Query 127049 GTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 127108 ||||| | | |||||||||| || | ||||||||||||||| ||||| || ||||| Sbjct 750067 GTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGCGTTTTCACGAAAATT 750126 Query 127109 TGCAT 127113 ||||| Sbjct 750127 TGCAT 750131 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||| | ||||||||||| ||||| || || |||||||| ||| || |||| | Sbjct 750757 AGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACAT 750816 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| |||||| | | |||||||||| || | ||| |||||||| || || || | Sbjct 750817 TATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTCA 750876 Query 127101 CAAAAATCTGCAT 127113 | ||||||||||| Sbjct 750877 CGAAAATCTGCAT 750889 >seq963 Length=907533 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| | || | |||||||||||| ||||| ||||| || |||||| ||| || | Sbjct 28390 CCGGCGAAAATAAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 28331 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | ||||| |||||| || ||||||||| | || | || ||||| |||| Sbjct 28330 TTCACATTTTCGATGGTGTCGCTAGCCTCGACTTCCAAAGTGATGGTCTTGCCAGTCAAT 28271 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || || || |||||||| Sbjct 28270 GTCTTGACGAAGATCTGCAT 28251 >seq813 Length=135908 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| | || | |||||||||||| ||||| ||||| || |||||| ||| || | Sbjct 49698 CCGGCGAAAATAAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 49639 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | ||||| |||||| || ||||||||| | || | || ||||| |||| Sbjct 49638 TTCACATTTTCGATGGTGTCGCTAGCCTCGACTTCCAAAGTGATGGTCTTGCCAGTCAAT 49579 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || || || |||||||| Sbjct 49578 GTCTTGACGAAGATCTGCAT 49559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475490333038640