Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq335 100 3e-16 seq1 95.1 1e-14 seq919 82.4 7e-11 >seq335 Length=1426492 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | || | || ||||| ||||| || || ||||| || |||||||| ||| | Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTGCT 750398 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| ||| | ||||||||||| || |||||||| || | || |||||||| || Sbjct 750399 TTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAGC 750458 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || ||||| |||||||| Sbjct 750459 GTCTTCACAAAGATTTGCAT 750478 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | || | || ||||| ||||| || || ||||| || ||||| || || | Sbjct 751468 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 751527 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| || | ||||||||||| ||||||||||| |||| || |||||||| || Sbjct 751528 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCAGG 751587 Query 45321 GTTTTTACAAAAATTTGCAT 45340 ||||| ||||| |||||||| Sbjct 751588 GTTTTGACAAAGATTTGCAT 751607 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || || ||||| ||||| || || || || ||||| || || |||| || | | Sbjct 750007 CGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATG 750066 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 ||||| |||| ||||||||||| || | |||||||||||| || ||||| || |||||| Sbjct 750067 GTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGCGTTTTCACGAAAATT 750126 Query 45336 TGCAT 45340 ||||| Sbjct 750127 TGCAT 750131 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || ||||| ||||| || || ||||| || ||||| || || ||||| || | | Sbjct 750765 CGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCGATG 750824 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 |||||||||| ||||||||||| || | ||| |||||||| || || || || ||||| Sbjct 750825 GTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTCACGAAAATC 750884 Query 45336 TGCAT 45340 ||||| Sbjct 750885 TGCAT 750889 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || || ||||| ||||| || || || || ||||| || || |||| || | | Sbjct 751134 CGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATG 751193 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 ||||| |||| ||||||||||| || | |||||||||||| || ||||| || |||||| Sbjct 751194 GTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGCGTTTTCACGAAAATT 751253 Query 45336 TGCAT 45340 ||||| Sbjct 751254 TGCAT 751258 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || ||||| ||||| || || ||||| || ||||| || || ||||| || | Sbjct 749599 CGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCGATT 749658 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 |||||||||| ||||||||||| || | ||| |||||||| || || || || ||||| Sbjct 749659 GTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTCACGAAAATC 749718 Query 45336 TGCAT 45340 ||||| Sbjct 749719 TGCAT 749723 >seq1 Length=3556246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| || |||||||| ||||| |||||||| || ||||| || || Sbjct 2164727 TTACCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTG 2164786 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | || | |||||| || | ||| ||||| | ||| | || ||||| || Sbjct 2164787 GCTTTAA-CGTTCTCAATGGTGTCCGAGGCCTCCACTTCCAAAGTGATAGTCTTGCCAGT 2164845 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||||||||||||| Sbjct 2164846 GAGAGTCTTCACAAAAATTTGCAT 2164869 >seq919 Length=964439 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | |||| || || ||||| || || |||||||| ||||| || || || | Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTCGCT 116511 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | || | ||||||||| | ||||||||| | ||| | ||| || ||||| | | Sbjct 116512 TTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAAA 116571 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||| Sbjct 116572 GTCTTCACGAAAATTTGCAT 116591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993250279560