Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq919 95.1 3e-14 seq335 89.7 1e-12 seq1 84.2 5e-11 >seq919 Length=964439 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 ||||||||||| |||||||| ||||| ||| || ||||| ||||| ||||| Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTCGCT 116511 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||||| |||| |||||| | || || || ||||| ||||||||||| || || | | Sbjct 116512 TTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAAA 116571 Query 199610 GTTTTCACAAAAATTTGGTACATTTT 199635 || ||||| |||||||| |||||| Sbjct 116572 GTCTTCACGAAAATTTG---CATTTT 116594 >seq335 Length=1426492 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||| ||||||||||| |||||| |||||||| || ||||||||| Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTGCT 750398 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || || ||||| |||||| | | ||| || || | ||||| ||||| || || || Sbjct 750399 TTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAGC 750458 Query 199610 GTTTTCACAAAAATTTG 199626 || |||||||| ||||| Sbjct 750459 GTCTTCACAAAGATTTG 750475 >seq1 Length=3556246 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/150 (73%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| | ||||||||||| || || ||||| || || ||||| Sbjct 2164726 CTTACCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTT 2164785 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || ||| || | |||||| | | || || ||||| ||||| ||||| || || Sbjct 2164786 GGCTTTAACGTTCTCAATGGTGTCCGAGGCCTCCACTTCCAAAGTGATAGTCTTGCCAGT 2164845 Query 199606 GAGAGTTTTCACAAAAATTTGGTACATTTT 199635 |||||| |||||||||||||| |||||| Sbjct 2164846 GAGAGTCTTCACAAAAATTTG---CATTTT 2164872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178895000212987