Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 105 7e-18 seq335 87.8 2e-12 >seq1 Length=3556246 Score = 105 bits (116), Expect = 7e-18 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 133164 CACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTG 133223 |||||| || ||||| || | ||||||||||||||||| | |||||| || || ||||| Sbjct 2736721 CACGTAAGTTTCGATAAGCTTTGAATACATTTCCGAGTGAATGTTCTCGATAGCAATTTG 2736780 Query 133224 AAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||| |||||||| || || ||||| || || ||||| |||||||| | ||||||| Sbjct 2736781 AAAACCGTAAAAACAGCGAGCCTCTGGTACTTGAACTTCCTGAGCGAATCTCTCGACC 2736838 >seq335 Length=1426492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| |||||||| || |||||||| || || |||| ||||| || | Sbjct 751258 ATGCAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCT 751199 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | || | || |||| ||||| |||||||| |||||| ||||| Sbjct 751198 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAAT-CCCGCCAGACCA 751140 Query 38363 ACAGCGGCTCAT 38374 ||||||||| || Sbjct 751139 ACAGCGGCTTAT 751128 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| |||||||| || |||||||| || || |||| ||||| || | Sbjct 750131 ATGCAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCT 750072 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | || | || |||| ||||| |||||||| |||||| ||||| Sbjct 750071 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAAT-CCCGCCAGACCA 750013 Query 38363 ACAGCGGCTCATTT 38376 |||||| || |||| Sbjct 750012 ACAGCGCCTTATTT 749999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500161789946240