Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1097 118 4e-21 seq936 98.7 4e-15 seq335 91.5 6e-13 seq941 84.2 9e-11 >seq1097 Length=645754 Score = 118 bits (130), Expect = 4e-21 Identities = 218/317 (69%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 451293 AACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATG 451352 |||| ||| || | ||| ||| ||| ||||||||||| || || ||||| ||||| | Sbjct 374395 AACATTATTTTAGGCATCCCGTTCGTGACGCAGTAATTACAGTCCCGGCTTACTTCAACG 374336 Query 451353 ATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAA 451412 || | || | ||||| |||||||| |||||| ||| || ||| | ||||| || |||| Sbjct 374335 ATTCTCAGAGACAAGCCACTAAAGACGCAGGAGCTATCGCCGGTCTGAATGTGCTCCGAA 374276 Query 451413 TTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAG 451472 | || || ||||| || || || ||| | || ||||| | ||| || || | || Sbjct 374275 TCATCAACGAACCCACTGCTGCCGCTTTGGCTTATGG-TTTGGACAA--GAAGCTTAGAG 374219 Query 451473 AAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTT 451532 || | || |||| | |||||| |||| || || || ||| || | |||| Sbjct 374218 GTGATCAGAACGTTTTGATCTTTGATCTTGGCGGTGGTACCTTCGATGTCTCGATTCTTT 374159 Query 451533 CAAT---TGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAG 451589 | || ||||| | | |||||||| || | || ||||||||| ||| | |||| Sbjct 374158 CCATCAGTGAAGGCCAGCTCTTTGAAGTGAAATCTACGGCTGGTGATACCCATTTGGGAG 374099 Query 451590 GTGAAGATATTGATAAT 451606 | |||||| | |||||| Sbjct 374098 GCGAAGATTTCGATAAT 374082 >seq936 Length=65721 Score = 98.7 bits (108), Expect = 4e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 || || || ||||| | || | |||||| | || ||||| |||| || ||| | Sbjct 3030 TTCGCCCCGGAAGAGGTCTCTGCCATGGTTTTGTTGAAGATGAAGGAAATTGCGGAATCA 2971 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 || |||| ||| ||| |||| || | ||||| || ||||| ||||||||||| Sbjct 2970 TACCTTGGAAAAGAAGTCACTCATGCTGTGGTCACTGTCCCTGCTTACTTCAATGATGCC 2911 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 ||||| ||||| || |||||||| ||| || || ||| | || ||| | |||||||| Sbjct 2910 CAACGTCAAGCGACCAAAGATGCCGGAACGATCGCAGGTCTCAACGTTGTCCGAATTATC 2851 Query 451418 AATGAACCTACAGCAGC 451434 || || || |||||||| Sbjct 2850 AACGAGCCGACAGCAGC 2834 >seq335 Length=1426492 Score = 91.5 bits (100), Expect = 6e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||| || || ||||| || || || |||||| | || Sbjct 750478 ATGCAAATCTTTGTGAAGACGCTGACCGGCAAGACTATCACACTCGAAGTTGAAGCTTCC 750419 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| ||| | | ||| ||| |||||||| ||||||||||| ||||| ||||| Sbjct 750418 GACACCATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGAATCCCTCCGGATCAG 750359 Query 391170 CAACGTTTAATTTTCTCAGG 391189 || ||| | || ||| |||| Sbjct 750358 CAGCGTCTTATCTTCGCAGG 750339 >seq941 Length=940394 Score = 84.2 bits (92), Expect = 9e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || | |||||||| |||||||||||||| || || ||||| || || ||| Sbjct 141171 GATGCCGTCGTCACTGTTCCGGCTTATTTCAATGACAGCCAGCGTCAAGCCACCAAGGAT 141230 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGC 451434 || ||| ||||| || || ||||| || ||||| || || || ||||| ||||| Sbjct 141231 GCCGGAGCAATTGCGGGATTGAATGTCCTCCGAATCATAAACGAGCCTACTGCAGC 141286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975673822236188