Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1097 223 4e-53 >seq1097 Length=645754 Score = 223 bits (246), Expect = 4e-53 Identities = 729/1117 (65%), Gaps = 22/1117 (2%) Strand=Plus/Plus Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||| ||||| | ||| ||||| | |||||| || | | || ||| | ||| Sbjct 373261 CCCTTTTCATTTTTGATCTGGATCTTGTTGGATTTTCCGGTGCTTTTGTCTACGGCAGAG 373320 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 || | || ||| || || ||||| | || || | || | ||| ||||| || | Sbjct 373321 ACGTGCAGAATGCCGTTAGCATCGATGTCAAATGTGACCTCAATCTGTGGCACTCCGCGG 373380 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 ||||| | || || ||| | |||||||| || || ||| |||| ||| | | | | Sbjct 373381 GGTGCTGGCGGGATTCCCATCAAATCAAAAGTGCCGAGTCGGTTGTTGTCCTTAGTCATG 373440 Query 6815 TTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTG-A 6873 || ||||||||||| |||| || || || | || |||||||| | | | || Sbjct 373441 CCCCGCTCACCTTCATAAACTTGGATCGTGACTCCCGGCTGATTATC-GGCGTAGGTGCT 373499 Query 6874 GAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAAT 6933 ||||||||| | ||| | |||||| | ||| ||| |||| | ||||| | Sbjct 373500 GAAGATTTGAGTTGCCTTTGTTGGAATACGGGAATTCCTCTCGATAAGCTTTGTCATCAC 373559 Query 6934 ACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTG 6993 ||||| |||||| | || | ||| || || | ||||||| | | || ||| | Sbjct 373560 GCCACCAGCAGTTTCAATGCCCATAGAAAGCGGAGCAACGTCCACCAAAAGCACGTCCTT 373619 Query 6994 AACAGATTCGTTCCCTTCAC-CCG-TTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCG 7051 || || || | | ||| ||| | || || || ||||| || || || ||| | || Sbjct 373620 CACCGAACTGT--CTTGCACTCCGCTCAAAATTGCAGCTTGCACGGTTGCGCCGAAAGCT 373677 Query 7052 ACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAAC 7111 || || || || || || || | | ||| || ||||| || || | || | | Sbjct 373678 ACGGCTTCGTCCGGATTGATTGATAGATTGAGATCTTTGCCCGAGAAGAAGTCTTTGAGC 373737 Query 7112 ATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTC 7171 |||| || ||||| || || || || || || || |||| || || || | | || Sbjct 373738 ATTTTCTGGATTTTAGGAATACGAGTGGAACCGCCAACCATCACAATCTCGTCTATTTGG 373797 Query 7172 GATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAAC 7231 ||||| | |||| ||| || | | ||| || || | || | ||| ||||| Sbjct 373798 GATTTCGAAAGTTTTGCGTCCTTTAGGGCCTGTTCCACTGGCTGCAGAGTTTTTCGGAAG 373857 Query 7232 AAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCG 7291 | || |||| ||| ||||| || |||||| | || | | |||||| | ||| Sbjct 373858 AGATCTCCGCACAATTCTTCAAAGCGAGCACGGCTGATCTTGCTGTGGAAATCGATGCCA 373917 Query 7292 TCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGA---AGATAACGTTCGCTTT 7348 || | |||||| | ||||| |||| || | || || || | || ||||| Sbjct 373918 TCAACGAGCGAATCTACTTCAACAGTTGCTT---CAGTTGAGCTTGACAGTGTGCGCTTA 373974 Query 7349 GCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG---GAAATATCT 7405 || | || ||||| |||| ||||| || || ||||| | || | | | || ||| Sbjct 373975 GCATGTTCGCACGCGGTTCTCAAACGGCGCAGTGCACGGGCATTGCTGGGCGGGATGTCT 374034 Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465 ||| || ||||| || |||| | ||||| | || | | |||||||||| Sbjct 374035 CGACCATGCTTTCGTTTGAATTCTTTGGTAAAGTGCTGGAGCAATAGATTATCGAAATCT 374094 Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525 || || ||||| || ||||| || || || | ||| |||||||||| |||||| || Sbjct 374095 TCGCCTCCCAAATGGGTATCACCAGCCGTAGATTTCACTTCAAAGAGCTGGCCTTCACTG 374154 Query 7526 TT--TAACAA-CGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 | || || ||| ||||| || |||||||| || || ||||| || | |||||| | Sbjct 374155 ATGGAAAGAATCGAGACATCGAAGGTACCACCGCCAAGATCAAAGATCAAAACGTTCTGA 374214 Query 7583 TCGTCGTCTTTG-TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 || | ||| | ||||| || | ||| || || | ||| || || || ||||| || || Sbjct 374215 TC-ACCTCTAAGCTTCTTGTCCAAACCATAAGCCAAAGCGGCAGCAGTGGGTTCGTTGAT 374273 Query 7642 AATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCG 7700 || || || ||| ||||| || || |||| | | || ||||| || ||||||| || | Sbjct 374274 GATTCGGAGCACA-TTCAGACCGGCGATAGCTCCTGCGTCTTTAGTGGCTTGTCTCTGAG 374332 Query 7701 AATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 ||||||| ||||| |||||||| || | || ||||| Sbjct 374333 AATCGTTGAAGTAAGCCGGGACTGTAATTACTGCGTC 374369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635118819139240