Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 125 2e-23 seq335 113 1e-19 seq963 91.5 3e-13 seq875 91.5 3e-13 seq813 91.5 3e-13 >seq1 Length=3556246 Score = 125 bits (138), Expect = 2e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | || || |||||||| || ||||| || |||||||| || || Sbjct 2163884 CTTACCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTT 2163943 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||||||| |||||||| ||| ||||| || |||| ||||| || || Sbjct 2163944 AGCCTTGACGTTCTCAATTGTGTCCGAGGCTTCAACTTCCAGAGTAATGGTCTTGCCAGT 2164003 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | |||||| Sbjct 2164004 CAAAGTCTTGACGAATATTTGCAT 2164027 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| |||||||| | || || |||||||| || ||||| || |||||||| || || Sbjct 2162717 TACCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAG 2162776 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||||||||||||||||||||| ||| || || || |||| ||||| || |||| Sbjct 2162777 CCTTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCCAGAGTAATGGTCTTGCCAGTCA 2162836 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 |||| || ||||| | |||||| Sbjct 2162837 AAGTCTTGACGAAAATTTGCAT 2162858 Score = 116 bits (128), Expect = 8e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| |||||||| | || || |||||||| || ||||| || |||||||| || || Sbjct 2164421 TACCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAG 2164480 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||||||||||||| |||||||| || ||||| || |||| ||||| || |||| Sbjct 2164481 CCTTGACGTTCTCAATAGTGTCCGAGGCCTCAACTTCCAGAGTAATGGTCTTGCCAGTCA 2164540 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 |||| || ||||| | |||||| Sbjct 2164541 AAGTCTTGACGAAGATTTGCAT 2164562 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | || || |||||||| || |||||||| |||||||| || || Sbjct 2164726 CTTACCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTT 2164785 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || |||||||||||||||||||| |||||||| | || | ||||| || || Sbjct 2164786 GGCTTTAACGTTCTCAATGGTGTCCGAGGCCTCCACTTCCAAAGTGATAGTCTTGCCAGT 2164845 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 | ||| || || || | |||||||| Sbjct 2164846 GAGAGTCTTCACAAAAATTTGCATTT 2164871 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || ||||| | || || ||||| || || || || || ||||||||||| || Sbjct 2163579 TACCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCTTGAATCTTGG 2163638 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||||||||||||||||| || ||||| ||||| || | |||||||| |||| Sbjct 2163639 CTTTGACGTTCTCAATGGTGTCGGACGCCTCCACCTCAAGAGTGATAGTCTTTCCAGTCA 2163698 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 2163699 AGGTCTTGACGAAGATTTGCAT 2163720 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| | || || ||||| || ||||| || || ||||||||||| || Sbjct 2163171 CTTACCGGCAAAGATCAAACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCTTGAATCTT 2163230 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||||||||||| || || |||||||| || | |||||||| || Sbjct 2163231 GGCTTTGACGTTCTCAATGGTGTCAGACGCCTCAACTTCAAGAGTGATAGTCTTTCCGGT 2163290 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 2163291 GAGTGTCTTGACGAAGATTTGCAT 2163314 >seq335 Length=1426492 Score = 113 bits (124), Expect = 1e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || |||||||| || ||||||||||| || || || || |||||||| || || Sbjct 751117 TACCAGCAAAGATAAGCCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGG 751176 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||| ||||| |||||||| ||| ||| ||||| || || | ||| || || |||| Sbjct 751177 CCTTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCA 751236 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| | |||||| Sbjct 751237 GCGTTTTCACGAAAATTTGCAT 751258 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || ||||| || ||||||||||| || || || || |||||||| || || Sbjct 749990 TACCAGCAAAAATAAGGCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGG 750049 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||| ||||| |||||||| ||| ||| ||||| || || | ||| || || |||| Sbjct 750050 CCTTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCA 750109 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| | |||||| Sbjct 750110 GCGTTTTCACGAAAATTTGCAT 750131 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||||||||||||||| || || || || ||||| || ||||| ||||||||||| ||| Sbjct 750337 TACCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTG 750396 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||| || || |||||||| ||| ||| ||||| || || | ||||| || |||| Sbjct 750397 CTTTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCA 750456 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 || || || || | |||||| Sbjct 750457 GCGTCTTCACAAAGATTTGCAT 750478 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||||||||||||||| || || || || ||||| || ||||| |||||||| || || Sbjct 751466 TACCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGG 751525 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||| || || |||||||| ||| ||| ||||| || |||| ||||| || |||| Sbjct 751526 CTTTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCA 751585 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||| || || | |||||| Sbjct 751586 GGGTTTTGACAAAGATTTGCAT 751607 >seq963 Length=907533 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| ||||| |||||||| || || || |||||||||||||||||||| || || || Sbjct 28391 ACCGGCGAAAATAAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATCTTGGC 28332 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 ||| || || || |||||||| | || ||||| | || | ||||| || ||||| Sbjct 28331 CTTCACATTTTCGATGGTGTCGCTAGCCTCGACTTCCAAAGTGATGGTCTTGCCAGTCAA 28272 Query 195120 AGTTTTTACGAACACTTGCATTT 195142 || || ||||| | ||||||| Sbjct 28271 TGTCTTGACGAAGATCTGCATTT 28249 >seq875 Length=1085948 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || || || || || ||||| || |||||||| ||||||||||| || Sbjct 311568 TTACCGGCAAAAATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCTTGAATCTTA 311627 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || ||||||||||| || ||||| || || | |||||| || ||| Sbjct 311628 GCCTTCACATTATCAATGGTGTCGCTCGCCTCAACTTCGAGCGTGATCGTCTTCCCGGTC 311687 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 || || || || || | |||||||| Sbjct 311688 AATGTCTTCACAAAGATTTGCATTT 311712 >seq813 Length=135908 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| ||||| |||||||| || || || |||||||||||||||||||| || || || Sbjct 49699 ACCGGCGAAAATAAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATCTTGGC 49640 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 ||| || || || |||||||| | || ||||| | || | ||||| || ||||| Sbjct 49639 CTTCACATTTTCGATGGTGTCGCTAGCCTCGACTTCCAAAGTGATGGTCTTGCCAGTCAA 49580 Query 195120 AGTTTTTACGAACACTTGCATTT 195142 || || ||||| | ||||||| Sbjct 49579 TGTCTTGACGAAGATCTGCATTT 49557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109456566974687