Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq936 136 3e-26 seq1097 98.7 6e-15 seq335 98.7 6e-15 seq1 91.5 1e-12 seq125 89.7 3e-12 >seq936 Length=65721 Score = 136 bits (150), Expect = 3e-26 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 474640 TGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACA 474699 ||| | ||| ||||| | |||||| | | ||| | |||||||| || ||||| | Sbjct 3043 TGAGAATAAGCAATTCGCCCCGGAAGAGGTCTCTGCCATGGTTTTGTTGAAGATGAAGGA 2984 Query 474700 AACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATA 474759 || ||| ||||| |||||| ||||||| ||| |||| || | ||||| || || || Sbjct 2983 AATTGCGGAATCATACCTTGGAAAAGAAGTCACTCATGCTGTGGTCACTGTCCCTGCTTA 2924 Query 474760 TTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGT 474819 || |||||| | ||||||||||| || |||||||| |||| || |||||||| || || Sbjct 2923 CTTCAATGATGCCCAACGTCAAGCGACCAAAGATGCCGGAACGATCGCAGGTCTCAACGT 2864 Query 474820 TTTACGTATTATTAATGAACCAACAGCAGC 474849 | | || ||||| || || || |||||||| Sbjct 2863 TGTCCGAATTATCAACGAGCCGACAGCAGC 2834 >seq1097 Length=645754 Score = 98.7 bits (108), Expect = 6e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792 ||| ||||||||||| || || || || || || |||||||| | ||||| |||||||| Sbjct 374370 TGACGCAGTAATTACAGTCCCGGCTTACTTCAACGATTCTCAGAGACAAGCCACTAAAGA 374311 Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852 || ||| || || ||||| ||||| | || || || || ||||| || || ||||| Sbjct 374310 CGCAGGAGCTATCGCCGGTCTGAATGTGCTCCGAATCATCAACGAACCCACTGCTGCCGC 374251 Query 474853 ACTTGCTTATGGTCTTGATAAGAA 474876 | ||||||||| | || ||||| Sbjct 374250 TTTGGCTTATGGTTTGGACAAGAA 374227 >seq335 Length=1426492 Score = 98.7 bits (108), Expect = 6e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || || || |||||||| || ||||| ||||| |||||||||||||||||||||||| | Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTGCT 750398 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 |||||| ||| || || || | | | ||| || || ||||| || ||||| || Sbjct 750399 TTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAGC 750458 Query 480753 GTCTTAACGAAAATTTG 480769 ||||| || || ||||| Sbjct 750459 GTCTTCACAAAGATTTG 750475 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || ||||| |||||||| || ||||| ||||| ||||||||||||||||| ||||| | Sbjct 749584 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 749643 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 |||||| || || || || | | ||| || || || || || |||||||| Sbjct 749644 TTGACATTATCGATTGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 749703 Query 480753 GTCTTAACGAAAATTTG 480769 ||||| |||||||| || Sbjct 749704 GTCTTCACGAAAATCTG 749720 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || ||||| |||||||| || ||||| ||||| ||||||||||||||||| ||||| | Sbjct 750750 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 750809 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 |||||| || || || || | | ||| || || || || || |||||||| Sbjct 750810 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 750869 Query 480753 GTCTTAACGAAAATTTG 480769 ||||| |||||||| || Sbjct 750870 GTCTTCACGAAAATCTG 750886 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||||||||| || ||||| || || || ||||| ||||||||||| ||||| Sbjct 749992 CCAGCAAAAATAAGGCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 750051 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 |||||| || || || |||| | ||| || || || ||||| ||||| || Sbjct 750052 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 750111 Query 480753 GTCTTAACGAAAATTTG 480769 || || ||||||||||| Sbjct 750112 GTTTTCACGAAAATTTG 750128 >seq1 Length=3556246 Score = 91.5 bits (100), Expect = 1e-12 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| || ||||| || | ||| || || || || ||||| || ||||||||||||||||| Sbjct 2163171 CTTACCGGCAAAGATCAAACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCTTGAATCTT 2163230 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 |||||| ||||| || |||| | | || |||||| || ||||| || |||| Sbjct 2163231 GGCTTTGACGTTCTCAATGGTGTCAGACGCCTCAA-CTTCAAGAGTGATAGTCTTTCCGG 2163289 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 |||| ||||| ||||| ||||| Sbjct 2163290 TGAGTGTCTTGACGAAGATTTG 2163311 >seq125 Length=258542 Score = 89.7 bits (98), Expect = 3e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 474640 TGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACA 474699 ||| ||||| || || | |||||| | ||| | |||||||| || |||||| | Sbjct 207102 TGAGACTAAGCAGTTCGCTCCGGAAGAGATTCTGGCCATGGTTTTTTTGAAGATGAAAGA 207161 Query 474700 AACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATA 474759 ||| ||| |||| || ||| |||| || | | ||||||| | || || || || || Sbjct 207162 AACTGCGGAATCATGCCTCGGAGAAGAGGTCAATTATGCAGTGGTCACCGTACCTGCCTA 207221 Query 474760 TTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGT 474819 || |||||| | ||||||||||| || || ||||| ||| || || ||||| || | Sbjct 207222 CTTCAATGATGCCCAACGTCAAGCGACCAAGGATGCCGGATCGATCGCGGGTCTCAACAT 207281 Query 474820 TTTACGTATTATTAATGAACCAACAGCAGCCG 474851 | | || || || | || ||| ||||||| Sbjct 207282 TGTGCGAATCATCAGCGAGCCAGTCGCAGCCG 207313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268103662165628