Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq335 123 2e-23 seq1 91.5 1e-13 seq1074 89.7 5e-13 seq875 89.7 5e-13 >seq335 Length=1426492 Score = 123 bits (136), Expect = 2e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| |||||| | ||||| || ||||| || ||||||||||||||||| ||||| Sbjct 751610 ACCATGCAAATCTTTGTCAAAACCCTGACCGGCAAGACTATTACGCTCGAAGTCGAAGCT 751551 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||||| | || | || ||| |||||||||||||| |||||||| ||||| ||| Sbjct 751550 TCCGACACCATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGAT 751491 Query 24821 CAACAACGTTTGATCTTTGCCGG 24843 || || ||| | ||||| || || Sbjct 751490 CAGCAGCGTCTTATCTTCGCAGG 751468 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| ||||| || || || ||||||||||| ||||| || Sbjct 749723 ATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACGCTCGAAGTCGAAGCTTCC 749664 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| |||||||||||||| |||||||| ||||| ||||| Sbjct 749663 GACACAATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAG 749604 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| | |||||||| || Sbjct 749603 CAGCGTCTTATCTTTGCAGG 749584 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| ||||| || || || ||||||||||| ||||| || Sbjct 750889 ATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACGCTCGAAGTCGAAGCTTCC 750830 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| |||||||| ||||| ||||| Sbjct 750829 GACACCATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAG 750770 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| | |||||||| || Sbjct 750769 CAGCGTCTTATCTTTGCAGG 750750 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | |||||||| ||||| ||||| || ||||||||||| ||||| | Sbjct 751258 ATGCAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCT 751199 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || ||||| || || || ||| Sbjct 751198 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 751139 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | |||||||| || Sbjct 751138 CAGCGGCTTATCTTTGCTGG 751119 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | |||||||| ||||| ||||| || ||||||||||| ||||| | Sbjct 750131 ATGCAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCT 750072 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || ||||| || || || ||| Sbjct 750071 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 750012 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | || ||||| || Sbjct 750011 CAGCGCCTTATTTTTGCTGG 749992 >seq1 Length=3556246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || ||||| || || ||||| || || | Sbjct 2163314 ATGCAAATCTTCGTCAAGACACTCACCGGAAAGACTATCACTCTTGAAGTTGAGGCGTCT 2163255 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| |||||||| || || || || ||||| || Sbjct 2163254 GACACCATTGAGAACGTCAAAGCCAAGATTCAAGACAAGGAGGGTATTCCGCCCGACCAG 2163195 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || ||||||||||||||||| || Sbjct 2163194 CAGCGTTTGATCTTTGCCGGTAA 2163172 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || || || ||||| || | ||||| || ||| | Sbjct 2164869 ATGCAAATTTTTGTGAAGACTCTCACTGGCAAGACTATCACTTTGGAAGTGGAGGCCTCG 2164810 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| |||| | || |||||||||||| ||||| || || || || || Sbjct 2164809 GACACCATTGAGAACGTTAAAGCCAA-GATCCAAGACAAGGAAGGCATCCCGCCAGACCA 2164751 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 || || |||||||| ||||| || Sbjct 2164750 GCAGCGCTTGATCTTCGCCGGTAA 2164727 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || | || || || || ||||| || ||||| |||||| | Sbjct 2164027 ATGCAAATATTCGTCAAGACTTTGACTGGCAAGACCATTACTCTGGAAGTTGAAGCCTCG 2163968 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||||||||| || || || || || || || Sbjct 2163967 GACACAATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 2163908 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || ||||||||||| ||||| || Sbjct 2163907 CAGCGTTTGATCTTCGCCGGTAA 2163885 >seq1074 Length=682288 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 139155 CTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCAT 139214 |||||| ||||| ||||| ||||| ||| |||| |||||||||||| ||||| ||||| Sbjct 175843 CTTGATTGTACCCAAATTCTGTTGGTTGGACTTTCTGTTACAAGCATCCTTGTAGAGCAT 175902 Query 139215 ATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 |||||| || |||||||| | ||| | | |||||| Sbjct 175903 ATACGGAGTACCAGTTTCAATTTGCGACGTGATAATG 175939 >seq875 Length=1085948 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | ||||| || || || ||||||||||| || || | | Sbjct 311710 ATGCAAATCTTTGTGAAGACATTGACCGGGAAGACGATCACGCTCGAAGTTGAGGCGAGC 311651 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| ||||| || || || ||||| Sbjct 311650 GACACCATTGATAATGTGAAGGCTAAGATTCAAGACAAGGAAGGCATCCCGCCAGATCAG 311591 Query 24824 CAACGTTTGATCTTTGCCGGGAAA 24847 || ||| | || |||||||| ||| Sbjct 311590 CAGCGTCTCATTTTTGCCGGTAAA 311567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449887696629080