Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq335 89.7 4e-13 seq1 86.0 5e-12 >seq335 Length=1426492 Score = 89.7 bits (98), Expect = 4e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||||||||| || || || || |||||||| ||| |||| ||||||| |||| | || Sbjct 750357 TGCTGATCCGGAGGGATTCCTTCCTTGTCTTG-AATCTTTGCTTTGACATTTTCGATGGT 750415 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| ||| ||| ||||| || || ||||| ||||| || | || || ||||| || || Sbjct 750416 GTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAGCGTCTTCACAAAGATTTG 750475 Query 29784 CAT 29786 ||| Sbjct 750476 CAT 750478 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTG 29724 ||||||||||| || || || || |||||||| | || ||||||| | || | ||| Sbjct 751486 TGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCGATGGTG 751545 Query 29725 TCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || ||| ||| ||||| || || ||||| ||||| || | |||||| ||||| || ||| Sbjct 751546 TCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCAGGGTTTTGACAAAGATTTGC 751605 Query 29785 AT 29786 || Sbjct 751606 AT 751607 >seq1 Length=3556246 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | ||||| | ||||| || |||||||||||||| |||||||| ||| || Sbjct 2163172 TTACCGGCAAAGATCAAACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCTTG-AATCTT 2163230 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | |||||| | || | |||||||| || ||||||||||| ||||| || || || Sbjct 2163231 GGCTTTGACGTTCTCAATGGTGTCAGACGCCTCAACTTCAAGAGTGATAGTCTTTCCGGT 2163290 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || ||||| Sbjct 2163291 GAGTGTCTTGACGAAGATTTGCAT 2163314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385210932353301