Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1097 127 2e-23 seq936 87.8 1e-11 >seq1097 Length=645754 Score = 127 bits (140), Expect = 2e-23 Identities = 205/290 (71%), Gaps = 5/290 (2%) Strand=Plus/Plus Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 ||||||| |||||||| |||||||| | |||| || | ||||| | | |||| || | Sbjct 374081 GATTATCGAAATCTTCGCCTCCCAAATGGGTATCACCAGCCGTAGATTTCACTTCAAAGA 374140 Query 282249 GTCCATCTTCAA-GA--GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | ||||| || || | || | ||||| ||| ||||| || | |||||| | Sbjct 374141 GCTGGCCTTCACTGATGGAAAGAATCGAGACATCGAAGGTACCACCGCCAAGATCAAAGA 374200 Query 282306 TAAGTACATTCATTTCTTTGTCTTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCA 282364 | | || ||| || ||| | || || || | |||||| || ||||| |||||| Sbjct 374201 TCAAAACGTTCTGATCACC-TCTAAGCTTCTTGTCCAAACCATAAGCCAAAGCGGCAGCA 374259 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 || ||||| || || |||| | ||||| ||||| || || |||||| ||||||||| Sbjct 374260 GTGGGTTCGTTGATGATTCGGAGCACATTCAGACCGGCGATAGCTCCTGCGTCTTTAGTG 374319 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 |||||||| || |||||||| || || || || || ||||| || || || Sbjct 374320 GCTTGTCTCTGAGAATCGTTGAAGTAAGCCGGGACTGTAATTACTGCGTC 374369 >seq936 Length=65721 Score = 87.8 bits (96), Expect = 1e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 || || || || || || ||||||| | ||| || ||||| || || |||| |||||| Sbjct 2834 GCTGCTGTCGGCTCGTTGATAATTCGGACAACGTTGAGACCTGCGATCGTTCCGGCATCT 2893 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || ||||| | ||| | ||| || || || ||||| ||||| | || |||| || Sbjct 2894 TTGGTCGCTTGACGTTGGGCATCATTGAAGTAAGCAGGGACAGTGACCACAGCATGAGTG 2953 Query 282479 ACTTCTTTTCCAA 282491 ||||||||||||| Sbjct 2954 ACTTCTTTTCCAA 2966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740543942341986