Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 seq335 87.8 2e-12 seq919 86.0 6e-12 >seq1 Length=3556246 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | || | ||||||||||| || ||||||||||||||||| |||| | Sbjct 2164726 CTTACCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATC-T 2164784 Query 133577 TTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | |||| | | | ||||| ||||| | || |||||| || | |||| || ||||| | Sbjct 2164785 TGGCTTTAACGTTCTCAATGGTGTCCGAGGCCTCCACTTCCAAAGTGATAGTCTTGCCAG 2164844 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || || ||||| ||||| Sbjct 2164845 TGAGAGTCTTCACAAAAATTTGCAT 2164869 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 ||||||||||| || |||||||| |||||||| |||||| ||||| | ||||| Sbjct 2162734 CGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATG 2162793 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 ||||| | || || || || | || | ||| ||||| |||| ||| || |||||||| Sbjct 2162794 GTGTCCGAGGCTTCAACCTCCAGAGTAATGGTCTTGCCAGTCAAAGTCTTGACGAAAATT 2162853 Query 133656 TGCATG 133661 |||||| Sbjct 2162854 TGCATG 2162859 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 ||||||||||| || |||||||| |||||||| |||||| ||||| | ||||| Sbjct 2164438 CGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATA 2164497 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 ||||| | || ||| || || | || | ||| ||||| |||| ||| || ||||| || Sbjct 2164498 GTGTCCGAGGCCTCAACTTCCAGAGTAATGGTCTTGCCAGTCAAAGTCTTGACGAAGATT 2164557 Query 133656 TGCATG 133661 |||||| Sbjct 2164558 TGCATG 2164563 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | || | ||||||||||| || |||||||| |||||||| |||||| Sbjct 2163884 CTTACCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTT 2163943 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| ||||| | || || || || | || | ||| ||||| || Sbjct 2163944 AGCCTTGACGTTCTCAATTGTGTCCGAGGCTTCAACTTCCAGAGTAATGGTCTTGCCAGT 2164003 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 || ||| || ||||| || |||||| Sbjct 2164004 CAAAGTCTTGACGAATATTTGCATG 2164028 >seq335 Length=1426492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 |||| || ||||| ||||| || ||||| || |||||||| |||||| ||||| | Sbjct 749999 AAATAAGGCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACAT 750058 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 ||| | ||||| | | || || |||| || | |||||||||||||| ||||| | Sbjct 750059 TCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGCGTTTTCA 750118 Query 133648 CGAAAATCTGCAT 133660 ||||||| ||||| Sbjct 750119 CGAAAATTTGCAT 750131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || |||||||| ||||| || ||||| || |||||||| |||||| ||||| | | Sbjct 751128 ATAAGCCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTC 751187 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||| | | || || |||| || | |||||||||||||| ||||| ||| Sbjct 751188 TCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGCGTTTTCACG 751247 Query 133650 AAAATCTGCAT 133660 ||||| ||||| Sbjct 751248 AAAATTTGCAT 751258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || |||||||| || |||||||| ||||||||||| |||||| |||| | Sbjct 749593 ATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTA 749652 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||||| | || || |||| |||| || |||||||| || || || ||| Sbjct 749653 TCGATTGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTCACG 749712 Query 133650 AAAATCTGCAT 133660 ||||||||||| Sbjct 749713 AAAATCTGCAT 749723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || |||||||| || |||||||| ||||||||||| |||||| |||| | Sbjct 750759 ATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTA 750818 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||||| | || || |||| |||| || |||||||| || || || ||| Sbjct 750819 TCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTCACG 750878 Query 133650 AAAATCTGCAT 133660 ||||||||||| Sbjct 750879 AAAATCTGCAT 750889 >seq919 Length=964439 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || ||||| ||||||||||||||||||||||| || |||||| Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTCGCT 116511 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||| | ||||||| | ||| || || | |||| || || ||||||| | Sbjct 116512 TTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAAA 116571 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || |||||||| ||||| Sbjct 116572 GTCTTCACGAAAATTTGCAT 116591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410158699640