Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq907 93.3 6e-13 seq557 89.7 7e-12 >seq907 Length=79662 Score = 93.3 bits (102), Expect = 6e-13 Identities = 124/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 724929 CAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCG 724988 |||||||||||| |||| | ||| || |||| ||||||| |||||||||||| Sbjct 47682 CAGGTGCACCCCGACACCGGT-----ATC-TCGTCCAAGGCCATGTCCATCATGAACTCG 47629 Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC 725048 || ||||||||| | |||| ||| ||| |||||||| || || |||| || |||| Sbjct 47628 TTCGTCAACGACGTCTTCGAGCGCCTCGCTGCCGAGGCCTCCCGACTCGCGCACTACAAC 47569 Query 725049 AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 ||||| || || | ||||| ||||||||| |||| || || ||| Sbjct 47568 AAGCGATCGACCATTTCGTCTCGCGAAATCCAGACCTCCGTTCGACTCATC 47518 >seq557 Length=1357928 Score = 89.7 bits (98), Expect = 7e-12 Identities = 124/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 724929 CAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCG 724988 |||||||||||| |||| || || || || || ||||||| |||||||||||| Sbjct 252454 CAGGTGCACCCCGACACCGGTGTC---TCGTCGAA--AG-CCATGTCCATCATGAACTCG 252401 Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC 725048 || || |||||| | |||| ||||| | ||||||| ||| |||||| | |||| Sbjct 252400 TTCGTGAACGACGTCTTCGAGCGCATTGCTGCCGAGGCTTCTCGATTGGCGCAATACAAC 252341 Query 725049 AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 ||||| |||||| | ||||| ||||||||| |||| || || ||| Sbjct 252340 AAGCGATCCACGATTTCGTCTCGCGAAATCCAGACCTCCGTCCGACTCATC 252290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177641348313282