Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 seq875 98.7 1e-15 seq335 95.1 1e-14 >seq1 Length=3556246 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || |||||||||||||| || ||||| ||||| || || ||||| || || Sbjct 2162719 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCC 2162778 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGgttttaccggttaaa 134693 ||||| || | ||||| || | ||| || || ||||||||||| || || || ||| Sbjct 2162779 TTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCCAGAGTAATGGTCTTGCCAGTCAAA 2162838 Query 134694 gttttaacgaaaatttgcat 134713 || || |||||||||||||| Sbjct 2162839 GTCTTGACGAAAATTTGCAT 2162858 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || |||||||||||||| || ||||| ||||| || || ||||| || || Sbjct 2163885 TTACCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTA 2163944 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGgttttaccggtt 134690 ||||| || | |||||| || | ||| || || ||||||||||| || || || Sbjct 2163945 GCCTTGACGTTCTCAATTGTGTCCGAGGCTTCAACTTCCAGAGTAATGGTCTTGCCAGTC 2164004 Query 134691 aaagttttaacgaaaatttgcat 134713 ||||| || ||||| |||||||| Sbjct 2164005 AAAGTCTTGACGAATATTTGCAT 2164027 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| |||||||||||||| |||||||| || || || || |||||||| || Sbjct 2163172 TTACCGGCAAAGATCAAACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCTTGAATCTTG 2163231 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGgttttaccggtt 134690 |||||| || | ||||| |||| || || || ||||| || || || ||||| Sbjct 2163232 GCTTTGACGTTCTCAATGGTGTCAGACGCCTCAACTTCAAGAGTGATAGTCTTTCCGGTG 2163291 Query 134691 aaagttttaacgaaaatttgcat 134713 | || || ||||| |||||||| Sbjct 2163292 AGTGTCTTGACGAAGATTTGCAT 2163314 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || |||||||||||||| || ||||| ||||| || || ||||| || || Sbjct 2164423 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCC 2164482 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGgttttaccggttaaa 134693 ||||| || | ||||| || | || || || ||||||||||| || || || ||| Sbjct 2164483 TTGACGTTCTCAATAGTGTCCGAGGCCTCAACTTCCAGAGTAATGGTCTTGCCAGTCAAA 2164542 Query 134694 gttttaacgaaaatttgcat 134713 || || ||||| |||||||| Sbjct 2164543 GTCTTGACGAAGATTTGCAT 2164562 >seq875 Length=1085948 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || |||||||| | |||||||||||| ||||| |||||||| || |||||||| || Sbjct 311567 TTTACCGGCAAAAATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCTTGAATCTT 311626 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGgttttaccggt 134689 || || || | |||||| || || || ||||| || || || || ||||| Sbjct 311627 AGCCTTCACATTATCAATGGTGTCGCTCGCCTCAACTTCGAGCGTGATCGTCTTCCCGGT 311686 Query 134690 taaagttttaacgaaaatttgcattttgtttttgttc 134726 || || || || || |||||||||||| |||| || Sbjct 311687 CAATGTCTTCACAAAGATTTGCATTTTGAGTTTGCTC 311723 >seq335 Length=1426492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 |||||||| || | |||||||||||| || || || ||||| || ||||| || || | Sbjct 749584 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 749643 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGgttttaccggttaaa 134693 ||||| || | ||||||||| | ||| || ||||| || || || || ||||| | Sbjct 749644 TTGACATTATCGATTGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 749703 Query 134694 gttttaacgaaaatttgcat 134713 || || |||||||| ||||| Sbjct 749704 GTCTTCACGAAAATCTGCAT 749723 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||| || || | |||||||||||| || || || ||||| || |||||||| ||| | Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTGCT 750398 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGgttttaccggttaaa 134693 ||||| || | |||||||| | ||| || ||||| || || || || ||||| | Sbjct 750399 TTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAGC 750458 Query 134694 gttttaacgaaaatttgcat 134713 || || || || |||||||| Sbjct 750459 GTCTTCACAAAGATTTGCAT 750478 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 |||||||| || | |||||||||||| || || || ||||| || ||||| || || | Sbjct 750750 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 750809 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGgttttaccggttaaa 134693 ||||| || | |||||||| | ||| || ||||| || || || || ||||| | Sbjct 750810 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 750869 Query 134694 gttttaacgaaaatttgcat 134713 || || |||||||| ||||| Sbjct 750870 GTCTTCACGAAAATCTGCAT 750889 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||| || || | |||||||||||| || || || ||||| || ||||| || || | Sbjct 751468 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 751527 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGgttttaccggttaaa 134693 ||||| || | |||||||| | ||| || ||||| ||||| || || ||||| | Sbjct 751528 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCAGG 751587 Query 134694 gttttaacgaaaatttgcat 134713 ||||| || || |||||||| Sbjct 751588 GTTTTGACAAAGATTTGCAT 751607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505387274917720