Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1074 118 1e-21 seq1 116 5e-21 >seq1074 Length=682288 Score = 118 bits (130), Expect = 1e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 69506 TATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGAC 69565 |||| ||| |||||||||||| ||||| || || || || ||||| ||||| || || | Sbjct 176046 TATAAAGCGTTTCGAATTCATCACCCCATACGTCGTCTAAACCAGGGCATTCGTTAGGGC 176105 Query 69566 ACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAA 69625 |||||| |||||| ||||| | || || || ||||| |||| ||| |||||||| | Sbjct 176106 ACATCAGTGACCATTTTTCATCGTTGTTGACACGCTTCATGAATAAATCAGGAATCCATA 176165 Query 69626 GAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGA 69685 || ||| | ||||| || | | ||||| || || || ||| || || | Sbjct 176166 AGGCGTAAAACAAATCTCGGGCACGTTCCTCTTCGGCACCGGTGTTCAATTTTAGCTCCA 176225 Query 69686 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCG 69743 ||| ||||||||||| | ||||| ||||| | ||| || || | | |||||||| Sbjct 176226 AAAATTCCATAATATCGGCGTGCCAAGGTTCCAAATAAATGGCAAATGCACCCGGTCG 176283 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/286 (67%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 ||||| ||| |||||||| | ||| | |||| |||| | || || || | || Sbjct 174242 TCCATGCGTGAAAATGCATTGAACTGCATTTTGCATAATTTGGGGCAGCGATGTGCAAAT 174301 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | |||||| |||||| ||||| || || | ||| || ||||||| | ||| || Sbjct 174302 TGAGCGATTGGGATTGATCAATGAACGCACCACGATCCGCGGCCATTTCGAGGATATGCT 174361 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA-GGCT--CG 68617 | || ||||||||||| | ||| || | | || | ||||| |||| || | | Sbjct 174362 TCTGCGGAATTTCCCAGACAGTTTTGTACAGCTCTCGGATATGTCGCGGAATGGATTGCA 174421 Query 68618 TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATT 68677 |||||||||||||||| ||| | |||| | |||||||| || |||||||| | | Sbjct 174422 CATTTTGAATGGATCCATTATCAGCAATAAGTTGGTTCTTGATATCGTCATTCCAAAGGT 174481 Query 68678 TTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAA 68723 | | || ||| | | |||||||| || || || || | ||| Sbjct 174482 TGATTTCGATTAGGTCCTTGAGGAGATGAGGGTTCACAATCTAAAA 174527 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 ||||| || |||| ||| || || || |||| ||||||| || |||||||| || ||| Sbjct 175844 TTGATTGTACCCAAATTCTGTTGGTTGGACTTTCTGTTACAAGCATCCTTGTAGAGCATA 175903 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATT 69467 ||||||||||||||||||| || || |||||| | |||| || | | |||||| Sbjct 175904 TACGGAGTACCAGTTTCAATTTGCGACGTGATAATGCTTCTCCACACCTCACGAGCATT 175962 >seq1 Length=3556246 Score = 116 bits (128), Expect = 5e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||| |||||||||||| || ||||| || ||||| || ||||| ||| || |||||| Sbjct 2737084 CCAGATTTTCATTCACAATCCCATCGGAGGCAGCAAAGAAGGCCAAAACACGTGTAATAA 2737143 Query 40059 AATATTTTTCATCGGGT--GTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116 | || ||| ||||| || | | | ||| || ||||| |||| | ||| || Sbjct 2737144 AGAATCGTTC--CGGGTCCGTTAGTCCACGCCAATCGGCCATATCCTTTGCGAGATCAAC 2737201 Query 40117 TTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATA 40176 ||||||| | ||||| || |||||| | || || || | |||||| |||||| || Sbjct 2737202 TTCTTCAACAGTCCAGAATGACGCCACAGCGCGCTTATAGAAGTTCCAAATATCAAAGTA 2737261 Query 40177 TTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 |||||| |||||||| ||||| | ||| ||||||| Sbjct 2737262 TTGTATCGGAAAAATCACAAAGCGATTCGGATTTT 2737296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686893679420040