Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-12 seq446 82.4 6e-11 >seq1 Length=3556246 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43907 TTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATA 43966 || || || ||||||||| ||||||| || || |||||||| || ||||||||||| || Sbjct 2736828 TTCGCTCAGGAAGTTCAAGTACCAGAGGCTCGCTGTTTTTACGGTTTTCAAATTGCTATC 2736769 Query 43967 GAAAATATTCATTCGGAAATGTA 43989 || || ||||| ||||||||||| Sbjct 2736768 GAGAACATTCACTCGGAAATGTA 2736746 >seq446 Length=1379412 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 19627 GTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTT 19686 || |||||||| || || || ||| | ||||| || | || || ||||| ||| | || Sbjct 480874 GTGGTCAATCAGCTTCTTTCCAAAATCGACGGAGTGGATCAGCTTAATAACATTCTTATT 480815 Query 19687 ATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTG 19746 || | |||||| ||| ||||| || || || || | | || || ||||| | Sbjct 480814 ATCGCCATGACGAATCAGCTGGATTTGATTGATCCAGCAATGCTTCGGCCTGGTCGTCTC 480755 Query 19747 GAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATA 19806 ||| | || | |||| |||||||||||||| || ||| | |||||||| ||||| Sbjct 480754 GAACTGCAGTTGCCAATTCACTTACCCGATGAAGCCGGCCGTCTCGAAATTTTGAACATC 480695 Query 19807 CATAC 19811 ||||| Sbjct 480694 CATAC 480690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447469724805