Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq335 93.3 4e-14 seq1 86.0 5e-12 >seq335 Length=1426492 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGT 27165 |||| ||| | || |||||||| |||||||| || | || || || || ||||||| Sbjct 751466 TACCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGG 751525 Query 27166 TTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCA 27225 ||| | | || | ||||| | ||||| ||||| || || |||| ||||| |||| Sbjct 751526 CTTTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCA 751585 Query 27226 GAGTTTTCACAAAGATTTGCATAGCTGCT 27254 | ||||| |||||||||||||| | |||| Sbjct 751586 GGGTTTTGACAAAGATTTGCATGGTTGCT 751614 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGT 27165 |||| ||| | || |||||||| |||||||| || | || || || || ||||| Sbjct 750337 TACCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTG 750396 Query 27166 TTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCA 27225 ||| | |||| | ||||| | ||||||||||| || || |||| ||||| |||| Sbjct 750397 CTTTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCA 750456 Query 27226 GAGTTTTCACAAAGATTTGCAT 27247 | || ||||||||||||||||| Sbjct 750457 GCGTCTTCACAAAGATTTGCAT 750478 >seq1 Length=3556246 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGT 27165 |||||||| | || | |||||| || || ||||| | ||||| || || |||||| Sbjct 2164421 TACCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAG 2164480 Query 27166 TTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCA 27225 || | | | || | |||||| | ||| |||||||| ||||| || | ||||| |||| Sbjct 2164481 CCTTGACGTTCTCAATAGTGTCCGAGGCCTCAACTTCCAGAGTAATGGTCTTGCCAGTCA 2164540 Query 27226 GAGTTTTCACAAAGATTTGCAT 27247 ||| || || ||||||||||| Sbjct 2164541 AAGTCTTGACGAAGATTTGCAT 2164562 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||||||| | || | |||||| || || ||||| | ||||| || || |||||| Sbjct 2163885 TTACCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTA 2163944 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 || | | | || | ||||| | |||||||||||| ||||| || | ||||| ||| Sbjct 2163945 GCCTTGACGTTCTCAATTGTGTCCGAGGCTTCAACTTCCAGAGTAATGGTCTTGCCAGTC 2164004 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || || |||||||| Sbjct 2164005 AAAGTCTTGACGAATATTTGCAT 2164027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424925279978232