Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1097 143 8e-29 seq335 113 1e-19 seq1 105 2e-17 seq875 100 9e-16 seq936 96.9 1e-14 seq919 93.3 1e-13 >seq1097 Length=645754 Score = 143 bits (158), Expect = 8e-29 Identities = 460/701 (66%), Gaps = 16/701 (2%) Strand=Plus/Minus Query 349606 TGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGA 349665 ||| || || ||||| || || || || || || ||| | ||| | || || ||||| Sbjct 374370 TGACGCAGTAATTACAGTCCCGGCTTACTTCAACGATTCTCAGAGACAAGCCACTAAAGA 374311 Query 349666 TGCTGGCAGC-ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAG 349724 || || ||| || || || | ||||| || |||| || || |||||||||||||| | Sbjct 374310 CGCAGG-AGCTATCGCCGGTCTGAATGTGCTCCGAATCATCAACGAACCCACTGCTGCCG 374252 Query 349725 CAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATT 349784 | | || ||||| | || || | | | || | || || | || |||||| Sbjct 374251 CTTTGGCTTATGGTTTGGACAAGAAGCTTAGAGGTGATCAGAACGTTTTGATCTTTGATC 374192 Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACTAACACT---TGAAGAGGGAATTTTTGAAG 349841 | || |||||||| || ||||| || | || | | ||||| | ||||||| Sbjct 374191 TTGGCGGTGGTACCTTCGATGTCTCGATTCTTTCCATCAGTGAAGGCCAGCTCTTTGAAG 374132 Query 349842 TTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTT 349901 | ||| | || ||||||||||| ||| | || || |||||||| ||||||| | | | | Sbjct 374131 TGAAATCTACGGCTGGTGATACCCATTTGGGAGGCGAAGATTTCGATAATC-TATTGCTC 374073 Query 349902 C-GCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATAT--TGGAGA-TAATCC 349956 | ||| ||| |||||||| || || |||| | || || | | ||| | Sbjct 374072 CAGCACTTTACCAAAGAATTCAAACG-AAAGCATGGTCGAGACATCCCGCCCAGCAATGC 374014 Query 349957 TAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTAC 350016 | ||| |||| || | ||||| ||||| |||| ||||||||| | | ||| | Sbjct 374013 CCGTGCACTGCGCCGTTTGAGAACCGCGTGCGAACATGCTAAGCGCACACTGTCAAGCTC 373954 Query 350017 TACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATC--T 350074 || || | || ||||| | ||||| || | |||||||| |||||| || | Sbjct 373953 AACTGAAGCAACTGTTGAAGTAGATTCGCTCGTTGATGGCATCGATTTC--CACAGCAAG 373896 Query 350075 ATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCT 350134 || | |||||||| ||||||||||| || ||||| || || ||| || | || Sbjct 373895 ATCAGCCGTGCTCGCTTTGAAGAATTGTGCGGAGATCTCTTCCGAAAAACTCTGCAGCCA 373836 Query 350135 GTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTA 350194 |||||| | | |||| || |||||| | || ||| || || || || | || | Sbjct 373835 GTGGAACAGGCCCTAAAGGACGCAAAACTTTCGAAATCCCAAATAGACGAGATTGTGATG 373776 Query 350195 GTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGC 350254 ||||| ||||| || |||||||| ||| | || | | || || || || ||| Sbjct 373775 GTTGGCGGTTCCACTCGTATTCCTAAAATCCAGAAAATGCTCAAAGACTTCTTCTCGGGC 373716 Query 350255 AAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGC 350295 ||||| | | |||||| ||||| || ||||| || || Sbjct 373715 AAAGATCTCAATCTATCAATCAATCCGGACGAAGCCGTAGC 373675 >seq335 Length=1426492 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| ||||| |||||||| ||||| |||||||| || || || || || ||| Sbjct 749584 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 749643 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || |||||||| || | || || | ||| ||||| || || | ||||| ||||| || Sbjct 749644 TTGACATTATCGATTGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 749703 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || ||||||||||| Sbjct 749704 GTCTTCACGAAAATCTGCAT 749723 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| ||||| |||||||| ||||| |||||||| || || || || || ||| Sbjct 750750 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 750809 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || |||||||| || | || || | ||| ||||| || || | ||||| ||||| || Sbjct 750810 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 750869 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || ||||||||||| Sbjct 750870 GTCTTCACGAAAATCTGCAT 750889 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| || || || || || || || ||||| || || || || || || || Sbjct 751119 CCAGCAAAGATAAGCCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 751178 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | ||||| | ||| ||||| || || | || || ||||| || Sbjct 751179 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 751238 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||| ||||| Sbjct 751239 GTTTTCACGAAAATTTGCAT 751258 >seq1 Length=3556246 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||| | ||| ||||| || || ||||| || || || || ||||| || Sbjct 2163172 TTACCGGCAAAGATCAAACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCTTGAATCTTG 2163231 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||||| || || ||||| | ||||| | ||||||||||| || | ||||||||||| Sbjct 2163232 GCTTTGACGTTCTCAATGGTGTCAGACGCCTCAACTTCAAGAGTGATAGTCTTTCCGGTG 2163291 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || || ||||| Sbjct 2163292 AGTGTCTTGACGAAGATTTGCAT 2163314 >seq875 Length=1085948 Score = 100 bits (110), Expect = 9e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 140594 TTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTT 140653 ||| || ||||| || ||||| |||||||| || || || ||||| || || ||||| || Sbjct 311567 TTTACCGGCAAAAATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCTTGAATCTT 311626 Query 140654 AGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || ||||||||||| | || | |||||||| || || | ||||| ||||| Sbjct 311627 AGCCTTCACATTATCAATGGTGTCGCTCGCCTCAACTTCGAGCGTGATCGTCTTCCCGGT 311686 Query 140714 TAGTGTTTTTACAAAAATCTGCATT 140738 | ||| || ||||| || |||||| Sbjct 311687 CAATGTCTTCACAAAGATTTGCATT 311711 >seq936 Length=65721 Score = 96.9 bits (106), Expect = 1e-14 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || ||||| | || | |||||||| | || |||||||||||||| ||| |||| | Sbjct 3024 CCGGAAGAGGTCTCTGCCATGGTTTTGTTGAAGATGAAGGAAATTGCGGAATCATACCTT 2965 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || ||| ||| ||||||| | ||||| || || || || ||||||||||| ||| Sbjct 2964 GGAAAAGAAGTCACTCATGCTGTGGTCACTGTCCCTGCTTACTTCAATGATGCCCAACGT 2905 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || |||||||| || | || || || | || ||| | |||| || || || Sbjct 2904 CAAGCGACCAAAGATGCCGGAACGATCGCAGGTCTCAACGTTGTCCGAATTATCAACGAG 2845 Query 349712 CCCACTGCTGCAG 349724 || || || |||| Sbjct 2844 CCGACAGCAGCAG 2832 >seq919 Length=964439 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| ||||| || || || ||||| || ||||| |||||||| || || ||| Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTCGCT 116511 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || |||| || ||||| | || | ||||||||||| | Sbjct 116512 TTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAAA 116571 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 116572 GTCTTCACGAAAATTTGCATT 116592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515220211599083