Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq875 134 2e-26 seq1 134 2e-26 seq335 122 1e-22 seq1052 104 3e-17 >seq875 Length=1085948 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| | ||||| ||||| || || || || |||||| | | Sbjct 311711 AATGCAAATCTTTGTGAAGACATTGACCGGGAAGACGATCACGCTCGAAGTTGAGGCGAG 311652 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| |||||||||| ||||| |||||||| || || || ||||| || Sbjct 311651 CGACACCATTGATAATGTGAAGGCTAAGATTCAAGACAAGGAAGGCATCCCGCCAGATCA 311592 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||||||||| |||||||| ||||| Sbjct 311591 GCAGCGTCTCATTTTTGCCGGTAA 311568 >seq1 Length=3556246 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||| |||||||| |||||||| |||||| | | Sbjct 2163314 ATGCAAATCTTCGTCAAGACACTCACCGGAAAGACTATCACTCTTGAAGTTGAGGCGTCT 2163255 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || || || ||||| ||||||||||| ||||| || |||||| Sbjct 2163254 GACACCATTGAGAACGTCAAAGCCAAGATTCAAGACAAGGAGGGTATTCCGCCCGACCAG 2163195 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| | || ||||| |||||| Sbjct 2163194 CAGCGTTTGATCTTTGCCGGTAAG 2163171 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | || |||||||| |||||||| |||||||| | Sbjct 2162858 ATGCAAATTTTCGTCAAGACTTTGACTGGCAAGACCATTACTCTGGAGGTTGAAGCCTCG 2162799 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | |||||||| || || ||||||||||| || || ||||||||| Sbjct 2162798 GACACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 2162739 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || || || |||| Sbjct 2162738 CAGCGTTTGATCTTCGCCGGTA 2162717 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || |||||||| |||||||| || |||||| | Sbjct 2164562 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAGACCATTACTCTGGAAGTTGAGGCCTCG 2164503 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | |||||||| || || ||||||||||| || || ||||||||| Sbjct 2164502 GACACTATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 2164443 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || || || |||| Sbjct 2164442 CAGCGTTTGATCTTCGCCGGTA 2164421 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || |||||||| ||||||||||| ||| | Sbjct 2163720 ATGCAAATCTTCGTCAAGACCTTGACTGGAAAGACTATCACTCTTGAGGTGGAGGCGTCC 2163661 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || || || ||||| ||||||||||| || || || |||||| Sbjct 2163660 GACACCATTGAGAACGTCAAAGCCAAGATTCAAGACAAGGAGGGTATCCCGCCCGACCAG 2163601 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | || ||||| |||| Sbjct 2163600 CAGCGCTTGATCTTTGCCGGTA 2163579 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | || |||||||| |||||||| || ||||| | Sbjct 2164027 ATGCAAATATTCGTCAAGACTTTGACTGGCAAGACCATTACTCTGGAAGTTGAAGCCTCG 2163968 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | |||||||| || || ||||||||||| || || ||||||||| Sbjct 2163967 GACACAATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 2163908 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| | || || || |||||| Sbjct 2163907 CAGCGTTTGATCTTCGCCGGTAAG 2163884 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || || ||||||||||| ||| | || || ||| | Sbjct 2164870 AATGCAAATTTTTGTGAAGACTCTCACTGGCAAGACTATCACTTTGGAAGTGGAGGCCTC 2164811 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || | || || || || || |||||||| || || || |||||||| Sbjct 2164810 GGACACCATTGAGAACGTTAAAGCCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCA 2164751 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| | || || || |||||| Sbjct 2164750 GCAGCGCTTGATCTTCGCCGGTAAG 2164726 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 27534 AATT-TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAA 27592 |||| ||| | || |||||||||||||||| || ||| | | ||||| || |||||| Sbjct 2164663 AATTCTTTACAGGAAAGCAACTCGAGGATGGCCGCACCTTGTCGGACTACAACATCCAAA 2164604 Query 27593 AGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| |||||||| | || |||||||| |||||||| Sbjct 2164603 AGGAATCGACTCTTCACTTGGTGTTGCGTCTGCGCGGTGG 2164564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 |||||||| |||||||||| || ||| | | ||||| || ||||||||||||| ||| Sbjct 2162948 GGTAAGCAGCTCGAGGATGGCCGCACCTTGTCGGACTACAACATCCAAAAGGAATCGACT 2162889 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| | || |||||||| |||||||| Sbjct 2162888 CTTCACTTGGTGTTGCGTCTGCGCGGTGG 2162860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 |||||| ||||| | | ||||| |||||||||| || ||| | | ||||| || | Sbjct 2163417 GCGTCTGATTTTAG---GAAAGCAGCTCGAGGATGGCCGCACCTTGTCCGACTACAACAT 2163361 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||| ||||| ||| | || |||||||| |||||||| Sbjct 2163360 CCAAAAGGAATCGACTCTCCATTTGGTGTTGCGTCTGCGCGGTGG 2163316 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/104 (78%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 ||||| ||||| | | ||||| |||||||||| || ||| | | ||||| || || Sbjct 2164129 CGTCTGATTTTAG---GAAAGCAGCTCGAGGATGGCCGCACCTTGTCGGACTACAACATC 2164073 Query 27589 CAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||| |||||||| | || |||||||| |||||||| Sbjct 2164072 CAAAAGGAATCGACTCTTCACTTGGTGTTGCGTCTGCGCGGTGG 2164029 >seq335 Length=1426492 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| |||||||| |||||||||||||| || || || ||||| | Sbjct 750478 ATGCAAATCTTTGTGAAGACGCTGACCGGCAAGACTATCACACTCGAAGTTGAAGCTTCC 750419 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | || || || ||||| |||||||| ||||| ||||| || ||| Sbjct 750418 GACACCATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGAATCCCTCCGGATCAG 750359 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| || || || |||| Sbjct 750358 CAGCGTCTTATCTTCGCAGGTA 750337 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || ||||| |||||||| || || || || || || || | | Sbjct 750131 ATGCAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCT 750072 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || |||||||||||||| || |||||||| Sbjct 750071 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 750012 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || ||||||||||||| Sbjct 750011 CAGCGCCTTATTTTTGCTGGTA 749990 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||||||||| || || ||||||||||||||||| || || || || | Sbjct 751607 ATGCAAATCTTTGTCAAAACCCTGACCGGCAAGACTATTACGCTCGAAGTCGAAGCTTCC 751548 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || || || |||||||| ||||| ||||| || ||| Sbjct 751547 GACACCATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAG 751488 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| || || || |||| Sbjct 751487 CAGCGTCTTATCTTCGCAGGTA 751466 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || ||||| |||||||| || || || || || || || | | Sbjct 751258 ATGCAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCT 751199 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || |||||||||||||| || |||||||| Sbjct 751198 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 751139 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || || |||||||||| Sbjct 751138 CAGCGGCTTATCTTTGCTGGTA 751117 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/100 (82%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 27533 TAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAA 27592 |||| ||| | |||||||||||||| |||| ||||||||| | || || ||| |||||| Sbjct 750231 TAATGTTT-CAGGTAAGCAACTCGAAGATGGTCGTACCCTCTCGGATTACAATATCCAAA 750173 Query 27593 AGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || |||||||| || | |||||||||||||| Sbjct 750172 AGGAGTCGACGCTTCATCTTGTACTTCGTCTTCGCGGTGG 750133 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||||| ||||||||||| || || || || || || | Sbjct 750889 ATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACGCTCGAAGTCGAAGCTTCC 750830 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || || || |||||||| ||||| ||||| || ||| Sbjct 750829 GACACCATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAG 750770 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| || ||||| |||| Sbjct 750769 CAGCGTCTTATCTTTGCAGGTA 750748 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 ||| || | || |||||||||||||||| ||||||||| | || || ||| |||| ||| Sbjct 751357 ATTGTTTCAGGCAAGCAACTCGAGGATGGTCGTACCCTCTCGGATTACAATATCCAGAAG 751298 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || |||||||| || | |||||||||||||| Sbjct 751297 GAGTCGACGCTTCATCTTGTACTTCGTCTTCGCGGTGG 751260 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||||| ||||||||||| || || || || || || | Sbjct 749723 ATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACGCTCGAAGTCGAAGCTTCC 749664 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || || || || || |||||||| ||||| ||||| || ||| Sbjct 749663 GACACAATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAG 749604 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| || ||||| |||| Sbjct 749603 CAGCGTCTTATCTTTGCAGGTA 749582 >seq1052 Length=697068 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| | |||||||||||||| ||| | || || ||| | | Sbjct 3574 AATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACTATCACTTTGGAAGTCGAGGCTAG 3633 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | ||||| ||||| |||||||||| || ||||| || ||||| Sbjct 3634 CGAGACCATCGTCAATGTCAAGGCCAAAATCGAGGACAAGGAAGGCATTCCACCGGACCA 3693 Query 27525 GCAGCGTCTAATTTT 27539 |||||| || |||| Sbjct 3694 GCAGCGACTTGTTTT 3708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570297846042320