Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 3e-13 seq335 84.2 1e-11 seq875 82.4 5e-11 >seq1 Length=3556246 Score = 89.7 bits (98), Expect = 3e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 |||||||| || || || ||||| ||||| ||||| | || ||||||||| |||||| Sbjct 2164727 TTACCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTG 2164786 Query 34624 TGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||||||| | ||| ||||| | ||||||||||| || || || || || || Sbjct 2164787 -GCTTTAACGTTCTCAATGGTGTCCGAGGCCTCCACTTCCAAAGTGATAGTCTTGCCAGT 2164845 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTG 34710 | || ||||||||||| ||||| ||| Sbjct 2164846 GAGAGTCTTCACAAAAATTTGCATTTTG 2164873 >seq335 Length=1426492 Score = 84.2 bits (92), Expect = 1e-11 Identities = 108/144 (75%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||| ||||| || | ||||||||||| ||||| | ||||||||||||| |||||| Sbjct 749990 TACCAGCAAAAATAAGGCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTG- 750048 Query 34625 GTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || || | || ||||| ||| || ||||| | ||||||||||| ||||| Sbjct 750049 GCCTTGACATTCTCGATGGTGTCAGAAGCT-TCGACTTCGAGCGTTATCGTTTTGCCGGT 750107 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | ||||||||| ||||| ||||| Sbjct 750108 CAGCGTTTTCACGAAAATTTGCAT 750131 Score = 84.2 bits (92), Expect = 1e-11 Identities = 108/144 (75%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||| ||||| || | ||||||||||| ||||| | ||||||||||||| |||||| Sbjct 751117 TACCAGCAAAGATAAGCCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTG- 751175 Query 34625 GTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || || | || ||||| ||| || ||||| | ||||||||||| ||||| Sbjct 751176 GCCTTGACATTCTCGATGGTGTCAGAAGCT-TCGACTTCGAGCGTTATCGTTTTGCCGGT 751234 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | ||||||||| ||||| ||||| Sbjct 751235 CAGCGTTTTCACGAAAATTTGCAT 751258 >seq875 Length=1085948 Score = 82.4 bits (90), Expect = 5e-11 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 |||||||||||| || | |||||| || || ||||| | || ||||||||| ||| | Sbjct 311567 TTTACCGGCAAAAATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCT-TGAATCT 311625 Query 34623 TTGTTTTAACGATA-AAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680 | | || || || ||| ||||| |||| ||| ||||| | || ||||| || ||| Sbjct 311626 TAGCCTTCACATTATCAATGGTGTCGCTCGC-CTCAACTTCGAGCGTGATCGTCTTCCCG 311684 Query 34681 GTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || || |||||||| || ||||| |||| Sbjct 311685 GTCAATGTCTTCACAAAGATTTGCATTTTGA 311715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722845214313