Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq335 113 4e-20 seq1 107 2e-18 seq875 84.2 2e-11 >seq335 Length=1426492 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || ||||| ||||| |||||||||||| ||||||| || ||||| ||| | | Sbjct 751609 CCATGCAAATCTTTGTCAAAACCCTGACCGGCAAGACTATTACGCTCGAAGTCGAAGCTT 751550 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||||| | || || | |||||| || || |||||||| ||||| || || || |||| Sbjct 751549 CCGACACCATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATC 751490 Query 27106 AACAGCGTTTAATATACGCCGG 27127 | |||||| | || | ||| || Sbjct 751489 AGCAGCGTCTTATCTTCGCAGG 751468 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| || ||||| || || |||||||||||| |||| || || ||||| ||| | Sbjct 750482 CGGCATGCAAATCTTTGTGAAGACGCTGACCGGCAAGACTATCACACTCGAAGTTGAAGC 750423 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||||| | || || | |||||| ||| ||||||||||| ||||| || || || || Sbjct 750422 TTCCGACACCATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGAATCCCTCCGGA 750363 Query 27104 TCAACAGCGTTTAATATACGCCGG 27127 ||| |||||| | || | ||| || Sbjct 750362 TCAGCAGCGTCTTATCTTCGCAGG 750339 >seq1 Length=3556246 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || ||||| ||| |||| ||||||||||| || |||| Sbjct 2163315 CATGCAAATCTTCGTCAAGACACTCACCGGAAAGACTATCACTCTTGAAGTTGAGGCGTC 2163256 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| || ||||||||||| || || || || ||||| || Sbjct 2163255 TGACACCATTGAGAACGTCAAAGCCAAGATTCAAGACAAGGAGGGTATTCCGCCCGACCA 2163196 Query 27107 ACAGCGTTTAATATACGCCGGCAA 27130 |||||||| || | ||||| || Sbjct 2163195 GCAGCGTTTGATCTTTGCCGGTAA 2163172 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || |||| || ||| |||| |||||||| ||||| |||| Sbjct 2163721 CATGCAAATCTTCGTCAAGACCTTGACTGGAAAGACTATCACTCTTGAGGTGGAGGCGTC 2163662 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| |||||| || ||||||||||| || || || || ||||| || Sbjct 2163661 CGACACCATTGAGAACGTCAAAGCCAAGATTCAAGACAAGGAGGGTATCCCGCCCGACCA 2163602 Query 27107 ACAGCGTTTAATATACGCCGG 27127 ||||| || || | ||||| Sbjct 2163601 GCAGCGCTTGATCTTTGCCGG 2163581 >seq875 Length=1085948 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||||| ||| | || || || ||||| || || | Sbjct 311710 ATGCAAATCTTTGTGAAGACATTGACCGGGAAGACGATCACGCTCGAAGTTGAGGCGAGC 311651 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||||||||| |||||||| || || ||||| Sbjct 311650 GACACCATTGATAATGTGAAGGCTAAGATTCAAGACAAGGAAGGCATCCCGCCAGATCAG 311591 Query 27108 CAGCGTTTAATATACGCCGGCAAA 27131 |||||| | || | ||||| ||| Sbjct 311590 CAGCGTCTCATTTTTGCCGGTAAA 311567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434908826358720