Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq335 127 5e-24 seq919 118 2e-21 seq1 116 9e-21 seq963 100 7e-16 seq813 100 7e-16 >seq335 Length=1426492 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 |||||||||||||| || || || || ||||| | |||||||||||| || |||||| | Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTGCT 750398 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || |||||||||||||| || |||||| ||||| ||||| ||||| || || || Sbjct 750399 TTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAGC 750458 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | ||||| Sbjct 750459 GTCTTCACAAAGATTTGCAT 750478 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| |||||||| || || || || ||||| | |||||||||||| |||||||| | Sbjct 750750 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 750809 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || ||||||||||| || ||| || ||||| ||||||||||| || ||||| Sbjct 750810 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 750869 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 750870 GTCTTCACGAAAATCTGCAT 750889 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| |||||||| || || || || ||||| | |||||||||||| |||||||| | Sbjct 749584 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 749643 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || ||||| ||||| || ||| || ||||| ||||||||||| || ||||| Sbjct 749644 TTGACATTATCGATTGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 749703 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 749704 GTCTTCACGAAAATCTGCAT 749723 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 5/158 (3%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 |||||||||||||| || || || || ||||| | |||||||||||| |||||||| | Sbjct 751468 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 751527 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || ||||||||||| || ||| || ||||| || || ||||| || || || Sbjct 751528 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCAGG 751587 Query 211095 GTCTTTACAAACACCTGCATTTTATGGTTACTTGATGC 211132 || || ||||| | ||| |||||| ||||| || Sbjct 751588 GTTTTGACAAAGATTTGC-----ATGGTTGCTTGAAGC 751620 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || || |||||||| |||||||| || || | ||| |||||||| |||||||| Sbjct 749992 CCAGCAAAAATAAGGCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 750051 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || |||||||||||||| ||| || ||||| || ||||| || || || || Sbjct 750052 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 750111 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 750112 GTTTTCACGAAAATTTGCAT 750131 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || |||||||| || |||||||| || || | ||| |||||||| |||||||| Sbjct 751119 CCAGCAAAGATAAGCCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 751178 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || |||||||||||||| ||| || ||||| || ||||| || || || || Sbjct 751179 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 751238 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 751239 GTTTTCACGAAAATTTGCAT 751258 >seq919 Length=964439 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || || |||||||| ||||| | |||||||| ||||||||||| | Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTCGCT 116511 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || ||||||||||| || || || || | ||||||||||||||| || | | Sbjct 116512 TTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAAA 116571 Query 211095 GTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||||| Sbjct 116572 GTCTTCACGAAAATTTGCATTTT 116594 >seq1 Length=3556246 Score = 116 bits (128), Expect = 9e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | ||| || ||||| || || | ||||||||||| |||||||| Sbjct 2164726 CTTACCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTT 2164785 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| || |||||||| ||| || || || | |||||| ||||| || || Sbjct 2164786 GGCTTTAACGTTCTCAATGGTGTCCGAGGCCTCCACTTCCAAAGTGATAGTCTTGCCAGT 2164845 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 ||||||||| ||||| | |||||||| Sbjct 2164846 GAGAGTCTTCACAAAAATTTGCATTTT 2164872 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | || || ||||| || |||| || |||||||| || ||||| Sbjct 2163171 CTTACCGGCAAAGATCAAACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCTTGAATCTT 2163230 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| || ||||||||||| ||||| || |||||||| |||||||| || Sbjct 2163231 GGCTTTGACGTTCTCAATGGTGTCAGACGCCTCAACTTCAAGAGTGATAGTCTTTCCGGT 2163290 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || | ||||| Sbjct 2163291 GAGTGTCTTGACGAAGATTTGCAT 2163314 >seq963 Length=907533 Score = 100 bits (110), Expect = 7e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||| ||||| || || || || ||||||| ||||| |||||||||||||| Sbjct 28390 CCGGCGAAAATAAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 28331 Query 211035 TTCACGTTTTCGATGGTGTC-AGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 ||||| |||||||||||||| ||| || || || | |||||| ||||| || || | Sbjct 28330 TTCACATTTTCGATGGTGTCGCTAGC-CTCGACTTCCAAAGTGATGGTCTTGCCAGTCAA 28272 Query 211094 AGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | ||||||||| Sbjct 28271 TGTCTTGACGAAGATCTGCATTTT 28248 >seq813 Length=135908 Score = 100 bits (110), Expect = 7e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||| ||||| || || || || ||||||| ||||| |||||||||||||| Sbjct 49698 CCGGCGAAAATAAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 49639 Query 211035 TTCACGTTTTCGATGGTGTC-AGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 ||||| |||||||||||||| ||| || || || | |||||| ||||| || || | Sbjct 49638 TTCACATTTTCGATGGTGTCGCTAGC-CTCGACTTCCAAAGTGATGGTCTTGCCAGTCAA 49580 Query 211094 AGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | ||||||||| Sbjct 49579 TGTCTTGACGAAGATCTGCATTTT 49556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159125846270765