Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq919 118 3e-21 seq335 118 3e-21 seq1 107 5e-18 seq963 105 2e-17 seq813 105 2e-17 seq875 87.8 4e-12 >seq919 Length=964439 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| || || ||||||||||| || || |||||||| || |||||||| Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTCGCT 116511 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||||||||| || | || || || || ||||||||||| || |||||| Sbjct 116512 TTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAAA 116571 Query 225694 GTTTTTATGAACACTTGCATTTT 225716 || || | ||| | ||||||||| Sbjct 116572 GTCTTCACGAAAATTTGCATTTT 116594 >seq335 Length=1426492 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| |||||||| || |||||||| ||||| || || ||||||||||||||||| | Sbjct 751119 CCAGCAAAGATAAGCCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 751178 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||||||||| || | ||| || || | ||| ||||| ||||| |||| Sbjct 751179 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 751238 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 751239 GTTTTCACGAAAATTTGCAT 751258 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| || ||||| || |||||||| ||||| || || ||||||||||||||||| | Sbjct 749992 CCAGCAAAAATAAGGCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 750051 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||||||||| || | ||| || || | ||| ||||| ||||| |||| Sbjct 750052 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 750111 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 750112 GTTTTCACGAAAATTTGCAT 750131 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||||||||| || || || || || || || |||||||||||||| |||||| Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTGCT 750398 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| |||||||||||| || | ||| || || | ||||| |||||||| |||| Sbjct 750399 TTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAGC 750458 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | || | |||||| Sbjct 750459 GTCTTCACAAAGATTTGCAT 750478 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||||||||| || || || || || || || |||||||||||||||||||| Sbjct 751468 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 751527 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||||||||| || | ||| || || | ||| || |||||||| |||| Sbjct 751528 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCAGG 751587 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | || | |||||| Sbjct 751588 GTTTTGACAAAGATTTGCAT 751607 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || |||||||| || || || || || || || |||||||||||||||||||| Sbjct 750750 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 750809 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||||||||| || | ||| || || | ||||||||||||||| || | Sbjct 750810 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 750869 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 750870 GTCTTCACGAAAATCTGCAT 750889 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || |||||||| || || || || || || || |||||||||||||||||||| Sbjct 749584 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 749643 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||| ||||| || | ||| || || | ||||||||||||||| || | Sbjct 749644 TTGACATTATCGATTGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 749703 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 749704 GTCTTCACGAAAATCTGCAT 749723 >seq1 Length=3556246 Score = 107 bits (118), Expect = 5e-18 Identities = 114/148 (77%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| | || || ||||| ||||| || |||||||||||||||||| | Sbjct 2164726 CTTACCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATC-T 2164784 Query 225630 TTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | |||| | | | || |||||||| |||| ||||| || || ||||| |||||||| | Sbjct 2164785 TGGCTTTAACGTTCTCAATGGTGTCCGAGGCCTCCACTTCCAAAGTGATAGTCTTGCCAG 2164844 Query 225689 TCAAAGTTTTTATGAACACTTGCATTTT 225716 | | ||| || | || | ||||||||| Sbjct 2164845 TGAGAGTCTTCACAAAAATTTGCATTTT 2164872 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | || || ||||| ||||| || || ||||||||||||||||| | Sbjct 2162719 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCC 2162778 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || || |||||||| |||| ||| || || | || || |||||||| |||||| Sbjct 2162779 TTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCCAGAGTAATGGTCTTGCCAGTCAAA 2162838 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 2162839 GTCTTGACGAAAATTTGCAT 2162858 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| | || || ||||| ||||| || || ||||||||||||||||| Sbjct 2163884 CTTACCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTT 2163943 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || || ||||| |||| ||| || || | || || |||||||| || Sbjct 2163944 AGCCTTGACGTTCTCAATTGTGTCCGAGGCTTCAACTTCCAGAGTAATGGTCTTGCCAGT 2164003 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | ||| | |||||| Sbjct 2164004 CAAAGTCTTGACGAATATTTGCAT 2164027 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | || || ||||| ||||| || || ||||||||||||||||| | Sbjct 2164423 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCC 2164482 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || || || ||||| |||| || || || | || || |||||||| |||||| Sbjct 2164483 TTGACGTTCTCAATAGTGTCCGAGGCCTCAACTTCCAGAGTAATGGTCTTGCCAGTCAAA 2164542 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 2164543 GTCTTGACGAAGATTTGCAT 2164562 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| | || || ||||||||||| ||||| ||||||||||| ||||| Sbjct 2163581 CCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCTTGAATCTTGGCT 2163640 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || || |||||||| || | ||||| || | ||||| ||||| || ||||| Sbjct 2163641 TTGACGTTCTCAATGGTGTCGGACGCCTCCACCTCAAGAGTGATAGTCTTTCCAGTCAAG 2163700 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 2163701 GTCTTGACGAAGATTTGCAT 2163720 >seq963 Length=907533 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||| |||||||| || || || || ||||| ||||| ||||| |||||||| | Sbjct 28390 CCGGCGAAAATAAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 28331 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| |||||||||||| | || || || || ||||| |||||||| ||||| Sbjct 28330 TTCACATTTTCGATGGTGTCGCTAGCCTCGACTTCCAAAGTGATGGTCTTGCCAGTCAAT 28271 Query 225694 GTTTTTATGAACACTTGCATTTT 225716 || || | ||| | |||||||| Sbjct 28270 GTCTTGACGAAGATCTGCATTTT 28248 >seq813 Length=135908 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||| |||||||| || || || || ||||| ||||| ||||| |||||||| | Sbjct 49698 CCGGCGAAAATAAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 49639 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| |||||||||||| | || || || || ||||| |||||||| ||||| Sbjct 49638 TTCACATTTTCGATGGTGTCGCTAGCCTCGACTTCCAAAGTGATGGTCTTGCCAGTCAAT 49579 Query 225694 GTTTTTATGAACACTTGCATTTT 225716 || || | ||| | |||||||| Sbjct 49578 GTCTTGACGAAGATCTGCATTTT 49556 >seq875 Length=1085948 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || || || || || || ||||| || |||||||||||||| ||||| Sbjct 311568 TTACCGGCAAAAATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCTTGAATCTTA 311627 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| || |||||||| | || || || | |||||||||||| || ||| Sbjct 311628 GCCTTCACATTATCAATGGTGTCGCTCGCCTCAACTTCGAGCGTGATCGTCTTCCCGGTC 311687 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 || || || | || | ||||||||| Sbjct 311688 AATGTCTTCACAAAGATTTGCATTTT 311713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192504293142134