Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 seq1074 120 4e-22 >seq1 Length=3556246 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 || ||| |||||||| || ||||| |||||||| || ||||| ||| || ||||||| Sbjct 2737085 CAGATTTTCATTCACAATCCCATCGGAGGCAGCAAAGAAGGCCAAAACACGTGTAATAAA 2737144 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 || ||| | || ||| | ||| || ||||| |||| | ||| ||||| Sbjct 2737145 GAATCGTTCCGGGTCCGTTAGTCCACGCCAATCGGCCATATCCTTTGCGAGATCAACTTC 2737204 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 |||| | ||||||||||||||| | || ||||| | ||||| |||||| ||||| Sbjct 2737205 TTCAACAGTCCAGAATGACGCCACAGCGCGCTTATAGAAGTTCCAAATATCAAAGTATTG 2737264 Query 47193 GATCGGAAAAATAACAAATCTATTTGGATTTT 47224 ||||||||||| ||||| | ||| ||||||| Sbjct 2737265 TATCGGAAAAATCACAAAGCGATTCGGATTTT 2737296 >seq1074 Length=682288 Score = 120 bits (132), Expect = 4e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||| |||||||| ||||| || || || |||||||| ||||| || || ||||||| ||| Sbjct 176056 TTCGAATTCATCACCCCATACGTCGTCTAAACCAGGGCATTCGTTAGGGCACATCAGTGA 176115 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| | |||| | || || || ||||| || | |||||| ||||||| || ||| Sbjct 176116 CCATTTTTCATCGTTGTTGACACGCTTCATGAATAAATCAGGAATCCATAAGGCGTAAAA 176175 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTT---CCTGTATTCTTTTTAAGATCTAGGAACTC 76695 | |||||||| |||||| || | || || ||| ||| || || | || || Sbjct 176176 CAAATCTCGGGC---ACGTTCCTCTTCGGCACCGGTGTTCAATTTTAGCTCCAAAAATTC 176232 Query 76696 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCG 76746 ||||||||| | ||||| ||||| | ||| || || | |||||||||| Sbjct 176233 CATAATATCGGCGTGCCAAGGTTCCAAATAAATGGCAAATGCACCCGGTCG 176283 Score = 95.1 bits (104), Expect = 2e-14 Identities = 194/286 (68%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 ||||| ||| |||||||| | ||| | |||| | || | || || || | || Sbjct 174242 TCCATGCGTGAAAATGCATTGAACTGCATTTTGCATAATTTGGGGCAGCGATGTGCAAAT 174301 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||| || |||||| ||||| || || | ||| || ||||||| | || || Sbjct 174302 TGAGCGATTGGGATTGATCAATGAACGCACCACGATCCGCGGCCATTTCGAGGATATGCT 174361 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATTTGT 75621 | || ||||||||||| | ||||||| | | | | ||||| |||| |||| Sbjct 174362 TCTGCGGAATTTCCCAGACAGTTTTGTACAGCTCTCGGATATGTCGCGGAATGGATTGCA 174421 Query 75622 -ATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATT 75680 ||||||||||||||| ||||| |||| | |||||||| || |||||||| | | Sbjct 174422 CATTTTGAATGGATCCATTATCAGCAATAAGTTGGTTCTTGATATCGTCATTCCAAAGGT 174481 Query 75681 TTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAA 75726 | | ||| ||| | | ||||||||||| || ||||| | ||| Sbjct 174482 TGATTTCGATTAGGTCCTTGAGGAGATGAGGGTTCACAATCTAAAA 174527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712918706531520