Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq335 113 1e-19 seq1 105 2e-17 seq919 87.8 4e-12 >seq335 Length=1426492 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||||||||| | |||||| |||| | |||||||||||| |||||||| ||| | Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTGCT 750398 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| | || | | |||| ||| || ||||| || || ||||| ||||| || || Sbjct 750399 TTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAGC 750458 Query 152085 GTCTTCACGAAGACCTGCAT 152104 |||||||| |||| ||||| Sbjct 750459 GTCTTCACAAAGATTTGCAT 750478 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || |||||||| | |||||| |||| | |||||||||||| ||||| || || | Sbjct 750750 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 750809 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| | || | | |||| ||| || ||||| || || || || ||||| ||||| Sbjct 750810 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 750869 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||||||||| | |||||| Sbjct 750870 GTCTTCACGAAAATCTGCAT 750889 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || |||||||| | |||||| |||| | |||||||||||| ||||| || || | Sbjct 749584 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 749643 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| | || | |||| ||| || ||||| || || || || ||||| ||||| Sbjct 749644 TTGACATTATCGATTGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 749703 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||||||||| | |||||| Sbjct 749704 GTCTTCACGAAAATCTGCAT 749723 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||||||||| | |||||| |||| | |||||||||||| ||||| || || | Sbjct 751468 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 751527 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| | || | | |||| ||| || ||||| || |||||||| ||||| || || Sbjct 751528 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCAGG 751587 Query 152085 GTCTTCACGAAGACCTGCAT 152104 || || || |||| ||||| Sbjct 751588 GTTTTGACAAAGATTTGCAT 751607 >seq1 Length=3556246 Score = 105 bits (116), Expect = 2e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | | ||||||||| | || ||| |||||||| ||||| || || Sbjct 2164727 TTACCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTG 2164786 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| || |||| | | |||| || ||| ||||| | ||| ||||| ||||| ||| Sbjct 2164787 GCTTTAACGTTCTCAATGGTGTCCGAGGCCTCCACTTCCAAAGTGATAGTCTTGCCAGTG 2164846 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 ||||||||||| || | |||||||| Sbjct 2164847 AGAGTCTTCACAAAAATTTGCATTTT 2164872 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| ||||| | | ||||||||| | || || || ||||| |||||||| || Sbjct 2163172 TTACCGGCAAAGATCAAACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCTTGAATCTTG 2163231 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | |||| || ||| ||||||||||| ||||| || || ||| Sbjct 2163232 GCTTTGACGTTCTCAATGGTGTCAGACGCCTCAACTTCAAGAGTGATAGTCTTTCCGGTG 2163291 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||| ||||| Sbjct 2163292 AGTGTCTTGACGAAGATTTGCAT 2163314 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||||||||| | | ||||||||| | || ||| || ||||| ||||| || || Sbjct 2164423 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCC 2164482 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| |||| | |||| || ||| ||||| |||||||| || ||||| || | | Sbjct 2164483 TTGACGTTCTCAATAGTGTCCGAGGCCTCAACTTCCAGAGTAATGGTCTTGCCAGTCAAA 2164542 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||| ||||||| ||||| Sbjct 2164543 GTCTTGACGAAGATTTGCAT 2164562 >seq919 Length=964439 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||||||||| || | ||| ||||| | | ||| |||||||| || || || || | Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTCGCT 116511 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| |||| | | |||| || ||| ||||| | ||| || || || || || | | Sbjct 116512 TTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAAA 116571 Query 152085 GTCTTCACGAAGACCTGCATTTT 152107 ||||||||||| | |||||||| Sbjct 116572 GTCTTCACGAAAATTTGCATTTT 116594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153794766557631