Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 145 2e-29 seq919 132 1e-25 seq335 131 4e-25 seq875 107 4e-18 seq963 100 6e-16 seq813 100 6e-16 seq1052 91.5 3e-13 >seq1 Length=3556246 Score = 145 bits (160), Expect = 2e-29 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||||||||| || ||||| ||| || |||||||||||||||||||| Sbjct 2163885 TTACCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTA 2163944 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | || || |||||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 2163945 GCCTTGACGTTCTCAATTGTGTCCGAGGCTTCAACTTCCAGAGTAATGGTCTTGCCAGTC 2164004 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 |||||||| |||||||| ||||| Sbjct 2164005 AAAGTCTTGACGAATATTTGCAT 2164027 Score = 140 bits (154), Expect = 7e-28 Identities = 115/140 (82%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| ||||||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 2164423 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCC 2164482 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || ||||||||||| || || ||||| ||||| || ||||| || |||||| Sbjct 2164483 TTGACGTTCTCAATAGTGTCCGAGGCCTCAACTTCCAGAGTAATGGTCTTGCCAGTCAAA 2164542 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 2164543 GTCTTGACGAAGATTTGCAT 2164562 Score = 136 bits (150), Expect = 8e-27 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| ||||||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 2162719 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTAGCC 2162778 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || |||||||| ||||| || || ||||| || ||||| || |||||| Sbjct 2162779 TTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCCAGAGTAATGGTCTTGCCAGTCAAA 2162838 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 2162839 GTCTTGACGAAAATTTGCAT 2162858 Score = 136 bits (150), Expect = 8e-27 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||||||||||||||| || ||||| ||||||||||||||||||||| ||||| Sbjct 2163172 TTACCGGCAAAGATCAAACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCTTGAATCTTG 2163231 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| ||| | || || ||||| || || || ||||| |||||||| ||||| || || Sbjct 2163232 GCTTTGACGTTCTCAATGGTGTCAGACGCCTCAACTTCAAGAGTGATAGTCTTTCCGGTG 2163291 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| || ||||| Sbjct 2163292 AGTGTCTTGACGAAGATTTGCAT 2163314 Score = 131 bits (144), Expect = 4e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||||||||| || || ||||| ||| ||||||||||||||||| ||||| ||| Sbjct 2163581 CCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCTTGAATCTTGGCT 2163640 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || ||||| || || || || || |||||||| ||||| || ||||| Sbjct 2163641 TTGACGTTCTCAATGGTGTCGGACGCCTCCACCTCAAGAGTGATAGTCTTTCCAGTCAAG 2163700 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 2163701 GTCTTGACGAAGATTTGCAT 2163720 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| |||||||| || || ||||| ||| || || ||||||||||||||||| Sbjct 2164727 TTACCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTG 2164786 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| ||| | || || |||||||| || || ||||| | |||||| ||||| || || Sbjct 2164787 GCTTTAACGTTCTCAATGGTGTCCGAGGCCTCCACTTCCAAAGTGATAGTCTTGCCAGTG 2164846 Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102 | |||||| || || || |||||||| Sbjct 2164847 AGAGTCTTCACAAAAATTTGCATTTT 2164872 >seq919 Length=964439 Score = 132 bits (146), Expect = 1e-25 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| ||||||| ||| |||||||| || || || ||||| || |||||||| ||| Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTCGCT 116511 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| || || |||||||| | |||||||||||| || |||||| Sbjct 116512 TTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAAA 116571 Query 283080 GTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| || |||||||| Sbjct 116572 GTCTTCACGAAAATTTGCATTTT 116594 >seq335 Length=1426492 Score = 131 bits (144), Expect = 4e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | ||| || || || || || || ||||||||||||||||| ||| Sbjct 749584 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 749643 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || ||||||| ||||| ||||||||||||||||| ||||||||||| || || | Sbjct 749644 TTGACATTATCGATTGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 749703 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 749704 GTCTTCACGAAAATCTGCAT 749723 Score = 131 bits (144), Expect = 4e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | ||| || || || || || || ||||||||||||||||| ||| Sbjct 750750 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 750809 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || ||||||| ||||| ||||||||||||||||| ||||||||||| || || | Sbjct 750810 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAGC 750869 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 750870 GTCTTCACGAAAATCTGCAT 750889 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | || |||||||| ||| || |||||||||||||||||||| || Sbjct 751119 CCAGCAAAGATAAGCCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 751178 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| ||||||||||||||||| || ||||| || || |||| Sbjct 751179 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 751238 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 751239 GTTTTCACGAAAATTTGCAT 751258 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| || | || |||||||| ||| || |||||||||||||||||||| || Sbjct 749992 CCAGCAAAAATAAGGCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCC 750051 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| ||||||||||||||||| || ||||| || || |||| Sbjct 750052 TTGACATTCTCGATGGTGTCAGAAGCTTCGACTTCGAGCGTTATCGTTTTGCCGGTCAGC 750111 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 750112 GTTTTCACGAAAATTTGCAT 750131 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | ||| || || || || || || ||||||||||| ||||||||| Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTTTGCT 750398 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| |||||||| |||||||| ||||| ||||| || |||| Sbjct 750399 TTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAGC 750458 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| || || || ||||| Sbjct 750459 GTCTTCACAAAGATTTGCAT 750478 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | ||| || || || || || || ||||||||||||||||| ||| Sbjct 751468 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCT 751527 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || ||||||| ||||| ||||||||||||||||| || || ||||| || |||| Sbjct 751528 TTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCAGG 751587 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || || || || ||||| Sbjct 751588 GTTTTGACAAAGATTTGCAT 751607 >seq875 Length=1085948 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| |||||||| || | ||| || || || ||| || || ||||||||||| ||||| Sbjct 311567 TTTACCGGCAAAAATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCTTGAATCTT 311626 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || || |||| || ||||| || || |||||||| ||||||||||| || || Sbjct 311627 AGCCTTCACATTATCAATGGTGTCGCTCGCCTCAACTTCGAGCGTGATCGTCTTCCCGGT 311686 Query 283076 CAAAGTCTTAACGAATATCTGCATTTT 283102 ||| ||||| || || || |||||||| Sbjct 311687 CAATGTCTTCACAAAGATTTGCATTTT 311713 >seq963 Length=907533 Score = 100 bits (110), Expect = 6e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| || || ||||| |||||||| || || || | ||||| ||||| ||| ||| Sbjct 28360 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTAGCCTCG 28301 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| | |||||| ||||| || ||||| ||||| ||||| ||||||||||| Sbjct 28300 ACTTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTGACGAAGATCTGCATTTT 28248 >seq813 Length=135908 Score = 100 bits (110), Expect = 6e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| || || ||||| |||||||| || || || | ||||| ||||| ||| ||| Sbjct 49668 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTAGCCTCG 49609 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| | |||||| ||||| || ||||| ||||| ||||| ||||||||||| Sbjct 49608 ACTTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTGACGAAGATCTGCATTTT 49556 >seq1052 Length=697068 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| || |||||||| | ||| || || || || | |||| || || ||| ||| Sbjct 2503 GGAATGCCTTCCTTGTCCTCGATTTTGGCCTTGACATTCACGATGGTCTCGCTAGCCTCG 2444 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| | ||||| ||||| |||||||||||||| ||||| ||||||||||| Sbjct 2443 ACTTCCAAAGTGAGAGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCATTTT 2391 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| || |||||||| | ||| || || || || | |||| || || ||| ||| Sbjct 3684 GGAATGCCTTCCTTGTCCTCGATTTTGGCCTTGACATTGACGATGGTCTCGCTAGCCTCG 3625 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| | |||||| ||||| || ||||||||||| ||||| ||||||||||| Sbjct 3624 ACTTCCAAAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCATTTT 3572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046715582619694