Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq919 95.1 9e-15 seq335 89.7 4e-13 seq875 82.4 5e-11 >seq1 Length=3556246 Score = 100 bits (110), Expect = 2e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 |||||||||||||| |||||||| || | || | ||| ||||| || ||||| || Sbjct 2163581 CCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCTTGAATCTTG-GC 2163639 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | |||| | |||||||||| | |||||||| | || || |||||||| || | Sbjct 2163640 TTTGACGTTCTCAATGGTGTCGGACGCCTCCACCTCAAGAGTGATAGTCTTTCCAGTCAA 2163699 Query 44317 GGTCTTCACGAAGATTTGCATG 44338 |||||| ||||||||||||||| Sbjct 2163700 GGTCTTGACGAAGATTTGCATG 2163721 Score = 98.7 bits (108), Expect = 7e-16 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||||||||||||||||||||| || | || | ||| ||||| || ||||| Sbjct 2163171 CTTACCGGCAAAGATCAAACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCTTGAATCTT 2163230 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 |||| | |||| | |||||||| | | || || || | || || |||||||| | Sbjct 2163231 G-GCTTTGACGTTCTCAATGGTGTCAGACGCCTCAACTTCAAGAGTGATAGTCTTTCCGG 2163289 Query 44313 TGAGGGTCTTCACGAAGATTTGCATG 44338 |||| ||||| ||||||||||||||| Sbjct 2163290 TGAGTGTCTTGACGAAGATTTGCATG 2163315 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| ||||||||||||||||| |||| || | || ||||| || ||||| || Sbjct 2162719 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTT-AGC 2162777 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 | | |||| | |||||||| | || ||| ||||||| ||||| ||||| || || | Sbjct 2162778 CTTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCCAGAGTAATGGTCTTGCCAGTCAA 2162837 Query 44317 GGTCTTCACGAAGATTTGCATG 44338 ||||| ||||| ||||||||| Sbjct 2162838 AGTCTTGACGAAAATTTGCATG 2162859 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||| ||||||||||||||||| |||| || | || ||||| || ||||| Sbjct 2163884 CTTACCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTT 2163943 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 || | | |||| | || ||||| | || ||| || |||| ||||| ||||| || | Sbjct 2163944 -AGCCTTGACGTTCTCAATTGTGTCCGAGGCTTCAACTTCCAGAGTAATGGTCTTGCCAG 2164002 Query 44313 TGAGGGTCTTCACGAAGATTTGCATG 44338 | | ||||| ||||| ||||||||| Sbjct 2164003 TCAAAGTCTTGACGAATATTTGCATG 2164028 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| ||||||||||||||||| |||| || | || ||||| || ||||| || Sbjct 2164423 CCGGCGAAGATCAAACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTT-AGC 2164481 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 | | |||| | || ||||| | || || || |||| ||||| ||||| || || | Sbjct 2164482 CTTGACGTTCTCAATAGTGTCCGAGGCCTCAACTTCCAGAGTAATGGTCTTGCCAGTCAA 2164541 Query 44317 GGTCTTCACGAAGATTTGCATG 44338 ||||| ||||||||||||||| Sbjct 2164542 AGTCTTGACGAAGATTTGCATG 2164563 >seq919 Length=964439 Score = 95.1 bits (104), Expect = 9e-15 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| ||||||| |||||| || || | ||| | |||||||| ||| |||||| || Sbjct 116452 CCGGCGAAGATCAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTC-GC 116510 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | ||| | |||||||||| | || || |||| || ||||||||||| || | Sbjct 116511 TTTCACATTCTCGATGGTGTCGGATGCCTCGACTTCCAAAGTGATCGTCTTTCCGGTCAA 116570 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||||||||| |||||||| Sbjct 116571 AGTCTTCACGAAAATTTGCAT 116591 >seq335 Length=1426492 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || |||||||| | |||||||||||| | ||| | |||||||| || ||||| || Sbjct 750750 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTG-GC 750808 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | || | |||||||||| | ||| || || | ||| |||||||| || ||||| Sbjct 750809 TTTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAG 750868 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || ||||| Sbjct 750869 CGTCTTCACGAAAATCTGCAT 750889 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || |||||||| | |||||||||||| | ||| | |||||||| || ||||| || Sbjct 749584 CCTGCAAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTG-GC 749642 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | || | || ||||||| | ||| || || | ||| |||||||| || ||||| Sbjct 749643 TTTGACATTATCGATTGTGTCGGAAGCTTCGACTTCGAGCGTGATCGTCTTGCCGGTGAG 749702 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || ||||| Sbjct 749703 CGTCTTCACGAAAATCTGCAT 749723 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||| | |||||||||||| | ||| | |||||||| || ||||| ||| Sbjct 750339 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATCTT-TGC 750397 Query 44258 -TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | || | |||||||||| | ||| || || | || || ||||| || || || Sbjct 750398 TTTGACATTTTCGATGGTGTCGGAAGCTTCAACTTCGAGTGTGATAGTCTTGCCGGTCAG 750457 Query 44317 GGTCTTCACGAAGATTTGCATG 44338 |||||||| |||||||||||| Sbjct 750458 CGTCTTCACAAAGATTTGCATG 750479 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||| | |||||||||||| | ||| | |||||||| || ||||| || Sbjct 751468 CCTGCGAAGATAAGACGCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTG-GC 751526 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | || | |||||||||| | ||| || || | |||||| ||||| || || || Sbjct 751527 TTTGACATTATCGATGGTGTCGGAAGCTTCGACTTCGAGCGTAATAGTCTTGCCGGTCAG 751586 Query 44317 GGTCTTCACGAAGATTTGCATG 44338 ||| || || |||||||||||| Sbjct 751587 GGTTTTGACAAAGATTTGCATG 751608 >seq875 Length=1085948 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254 || |||||||| || | |||||||||||||| || | |||||||| || ||||| Sbjct 311568 TTACCGGCAAAAATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCTTGAATCTTA 311627 Query 44255 TGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTG 44314 ||||| | | ||||||||| | || || || | ||| |||||||| || || Sbjct 311628 GCCTTCACATTATCAATGGTGTCGCTCGCCTCAACTTCGAGCGTGATCGTCTTCCCGGTC 311687 Query 44315 AGGGTCTTCACGAAGATTTGCAT 44337 | |||||||| ||||||||||| Sbjct 311688 AATGTCTTCACAAAGATTTGCAT 311710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982673818537