Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ditylenchus_20destructor_20[genbank_20GCA_5F001579705.1_202016-03- 03] 1,761 sequences; 111,138,200 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq335 131 4e-25 seq919 118 3e-21 seq1 118 3e-21 seq963 89.7 1e-12 seq813 89.7 1e-12 >seq335 Length=1426492 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || || || || || || ||||| ||||| || ||| || ||| Sbjct 750475 CAAATCTTTGTGAAGACGCTGACCGGCAAGACTATCACACTCGAAGTTGAAGCTTCCGAC 750416 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||||||| ||||| ||||||||||||||||| ||||| Sbjct 750415 ACCATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGAATCCCTCCGGATCAGCAG 750356 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||||||||| || Sbjct 750355 CGTCTTATCTTCGCAGG 750339 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || || |||||||| ||||| || ||| || ||| Sbjct 750886 CAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACGCTCGAAGTCGAAGCTTCCGAC 750827 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||| || ||||| ||||||||||||||||| ||||| Sbjct 750826 ACCATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAGCAG 750767 Query 178044 CGACTTATCTTCGCCGG 178060 || |||||||| || || Sbjct 750766 CGTCTTATCTTTGCAGG 750750 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || || |||||||| ||||| || ||| || ||| Sbjct 749720 CAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACGCTCGAAGTCGAAGCTTCCGAC 749661 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||| || ||||| ||||||||||||||||| ||||| Sbjct 749660 ACAATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAGCAG 749601 Query 178044 CGACTTATCTTCGCCGG 178060 || |||||||| || || Sbjct 749600 CGTCTTATCTTTGCAGG 749584 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || || |||||||| || ||||| || ||| || ||| Sbjct 751255 CAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCTGAC 751196 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 751195 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAACAG 751136 Query 178044 CGACTTATCTTCGCCGG 178060 || |||||||| || || Sbjct 751135 CGGCTTATCTTTGCTGG 751119 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || || |||||||| || ||||| || ||| || ||| Sbjct 750128 CAAATTTTCGTGAAAACGCTGACCGGCAAAACGATAACGCTCGAAGTCGAAGCTTCTGAC 750069 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 750068 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAACAG 750009 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 750008 CGCCTTATTTTTGCTGG 749992 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || || || || || || ||||| || ||| || ||| Sbjct 751604 CAAATCTTTGTCAAAACCCTGACCGGCAAGACTATTACGCTCGAAGTCGAAGCTTCCGAC 751545 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||| || ||||| ||||||||||||||||| ||||| Sbjct 751544 ACCATCGATAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAGCAG 751485 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||||||||| || Sbjct 751484 CGTCTTATCTTCGCAGG 751468 >seq919 Length=964439 Score = 118 bits (130), Expect = 3e-21 Identities = 114/146 (78%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||||||||| ||| | || ||||| |||||||| | || || || Sbjct 116594 AAAATGC---AAATTTTCGTGAAGACTTTGACCGGAAAGACGATCACTTTGGAAGTCGAG 116538 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||||||||||||| || ||| ||||| ||||| || ||||| |||||||| Sbjct 116537 GCATCCGACACCATCGAGAATGTGAAAGCGAAGATCCAGGATAAGGAAGGCATCCCTCCC 116478 Query 178035 GACCAGCAACGACTTATCTTCGCCGG 178060 ||||| || || || ||||||||||| Sbjct 116477 GACCAACAGCGTCTGATCTTCGCCGG 116452 >seq1 Length=3556246 Score = 118 bits (130), Expect = 3e-21 Identities = 116/149 (78%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||| ||||| |||||||| || || || ||||| | || ||||| Sbjct 2164872 AAAATGC---AAATTTTTGTGAAGACTCTCACTGGCAAGACTATCACTTTGGAAGTGGAG 2164816 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| |||||||| |||||||| ||| ||||| || ||||| ||||| ||||| || Sbjct 2164815 GCCTCGGACACCATTGAGAACGTTAAAGCCAAGATCCAAGACAAGGAAGGCATCCCGCCA 2164756 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063 |||||||| || | ||||||||||| || Sbjct 2164755 GACCAGCAGCGCTTGATCTTCGCCGGTAA 2164727 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || || || ||||| ||| ||| ||| Sbjct 2162855 CAAATTTTCGTCAAGACTTTGACTGGCAAGACCATTACTCTGGAGGTTGAAGCCTCGGAC 2162796 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 2162795 ACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAGCAG 2162736 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||||||||| Sbjct 2162735 CGTTTGATCTTCGCCGG 2162719 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || ||||| || ||||| || |||||||| || ||| Sbjct 2163717 CAAATCTTCGTCAAGACCTTGACTGGAAAGACTATCACTCTTGAGGTGGAGGCGTCCGAC 2163658 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||||||| |||||||| ||||| || || ||||| || |||||||| Sbjct 2163657 ACCATTGAGAACGTCAAAGCCAAGATTCAAGACAAGGAGGGTATCCCGCCCGACCAGCAG 2163598 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||| ||||| Sbjct 2163597 CGCTTGATCTTTGCCGG 2163581 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| || ||||| || || || || || ||| Sbjct 2163311 CAAATCTTCGTCAAGACACTCACCGGAAAGACTATCACTCTTGAAGTTGAGGCGTCTGAC 2163252 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||||||| |||||||| ||||| || || || || || |||||||| Sbjct 2163251 ACCATTGAGAACGTCAAAGCCAAGATTCAAGACAAGGAGGGTATTCCGCCCGACCAGCAG 2163192 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||| ||||| || Sbjct 2163191 CGTTTGATCTTTGCCGGTAA 2163172 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || || || || || || || || ||| ||| ||| Sbjct 2164024 CAAATATTCGTCAAGACTTTGACTGGCAAGACCATTACTCTGGAAGTTGAAGCCTCGGAC 2163965 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 2163964 ACAATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAGCAG 2163905 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||||||||| || Sbjct 2163904 CGTTTGATCTTCGCCGGTAA 2163885 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || || || || || || || || || ||| ||| Sbjct 2164559 CAAATCTTCGTCAAGACTTTGACTGGCAAGACCATTACTCTGGAAGTTGAGGCCTCGGAC 2164500 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 2164499 ACTATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAGCAG 2164440 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||||||||| Sbjct 2164439 CGTTTGATCTTCGCCGG 2164423 >seq963 Length=907533 Score = 89.7 bits (98), Expect = 1e-12 Identities = 110/147 (75%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| || || | || || || || ||||| | || || || Sbjct 28248 AAAATGC---AGATCTTCGTCAAGACATTGACTGGCAAGACCATCACTTTGGAAGTCGAG 28304 Query 177975 AGCTCA-GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 ||| ||||||||||| || || || ||||| |||||||||||||| || ||||| Sbjct 28305 -GCTAGCGACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCC 28363 Query 178034 GGACCAGCAACGACTTATCTTCGCCGG 178060 ||| ||||| |||||||| |||||||| Sbjct 28364 GGATCAGCAGCGACTTATTTTCGCCGG 28390 >seq813 Length=135908 Score = 89.7 bits (98), Expect = 1e-12 Identities = 110/147 (75%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| || || | || || || || ||||| | || || || Sbjct 49556 AAAATGC---AGATCTTCGTCAAGACATTGACTGGCAAGACCATCACTTTGGAAGTCGAG 49612 Query 177975 AGCTCA-GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 ||| ||||||||||| || || || ||||| |||||||||||||| || ||||| Sbjct 49613 -GCTAGCGACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCC 49671 Query 178034 GGACCAGCAACGACTTATCTTCGCCGG 178060 ||| ||||| |||||||| |||||||| Sbjct 49672 GGATCAGCAGCGACTTATTTTCGCCGG 49698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203704040438634