Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dracunculus_20medinensis_20[genbank_20GCA_5F000946415.1_202014-11- 13] 1,350 sequences; 103,750,844 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq8 86.0 5e-12 seq161 84.2 2e-11 >seq8 Length=2239894 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || || || ||||| || || || | | | | ||||| Sbjct 1730485 AACAAGATGAAGCGTCGATTCCTTCTGAATGTTATAGTCAGAAAGTGTGCGCCCATCTTC 1730426 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || || | |||| ||| || || ||| ||| || ||||| ||||| Sbjct 1730425 AAGTTGCTTTCCCGCAAAGATCAGACGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTG 1730366 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| | ||||| || || ||| || |||| ||||| || || Sbjct 1730365 GATCTTGGCTTTTACACTCTCTATTGTGTCAGAGGCTTCGACTGCTAACGTAATTGTCTT 1730306 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| |||||||| ||||||||||| Sbjct 1730305 GCCCGTCAGCGTTTTTACGAAAATTTGCAT 1730276 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || || || || || || || || | | | | ||||| Sbjct 1733780 AACAAGATGAAGCGTCGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGCCCATCTTC 1733721 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || || | |||| ||| || || ||| ||| || ||||| ||||| Sbjct 1733720 AAGTTGCTTTCCCGCAAAGATCAGACGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTG 1733661 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| | ||||| || || ||| || |||| ||||| || || Sbjct 1733660 GATCTTGGCTTTTACACTCTCTATTGTGTCAGAGGCTTCGACTGCTAACGTAATTGTCTT 1733601 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| |||||||| ||||||||||| Sbjct 1733600 GCCCGTCAGCGTTTTTACGAAAATTTGCAT 1733571 >seq161 Length=136094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCT 15282 |||||| | |||||||| || |||||| |||||||||||| ||||| ||| ||||| Sbjct 38056 CCAGCGAAAATCAAACGCTGCTGGTCGGGTGGAATTCCTTCCTTGTCCTGAATCTTTGC- 37998 Query 15283 CTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTTACCTGTCA 15341 ||| ||| | || || ||||| | || ||| || || | || || || ||||| |||| Sbjct 37997 CTTGACATTCTCAATAGTATC-CGATGCTTCAACTTCAAGTGTTATTGTCTTACCAGTCA 37939 Query 15342 GAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| ||||| Sbjct 37938 ATGTTTTCACGAAAATCTGCAT 37917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362173241020350