Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dracunculus_20medinensis_20[genbank_20GCA_5F000946415.1_202014-11- 13] 1,350 sequences; 103,750,844 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq89 136 3e-27 seq52 136 3e-27 seq787 122 6e-23 seq491 122 6e-23 seq362 122 6e-23 seq32 122 6e-23 seq8 104 2e-17 seq385 102 5e-17 seq161 82.4 5e-11 >seq89 Length=237237 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 234143 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 234202 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 234203 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 234237 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 236750 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 236809 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||||| Sbjct 236810 GGCAATATTTAGCCTTA 236826 >seq52 Length=376480 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 375534 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 375593 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 375594 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 375628 >seq787 Length=3036 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 889 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 948 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||||| Sbjct 949 GGCAATATTTAGCCTTA 965 >seq491 Length=11014 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 646 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 705 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||||| Sbjct 706 GGCAATATTTAGCCTTA 722 >seq362 Length=27042 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| ||||||||||||||| | |||||||| Sbjct 7263 AAGCCCGTTCCCTTGGCTGTGGTTTCGCCAGATAGTAGATAGGGACAGTGCGAATCTCGT 7322 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| || ||||||||||| Sbjct 7323 TAATCCATTCATGCGCGTCATTAGTTAGATGACGA 7357 >seq32 Length=690286 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 689781 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 689722 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||||| Sbjct 689721 GGCAATATTTAGCCTTA 689705 >seq8 Length=2239894 Score = 104 bits (114), Expect = 2e-17 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 38073 ATACAAATCCAATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTT 38132 |||||||| | ||| ||||| | | ||||| || | ||||||||| ||||| Sbjct 1707852 ATACAAAT----TAATTGCCACCACGAAGACGCAGAACAAGATGAAGAGTCGATTCCTTC 1707797 Query 38133 TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGG 38192 ||||| || || ||||| | || | || || | |||||||| ||||| || || Sbjct 1707796 TGAATGTTATAGTCAGAAAGCGTGCGCCCATCTTCAAGCTGTTTTCCCGCAAAGATCAGA 1707737 Query 38193 CGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACA 38252 || || ||||||| |||| ||||||||||||| || || || || || | | Sbjct 1707736 CGCTGCTGATCGGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTAACGTTTTCAATC 1707677 Query 38253 GTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATC 38312 |||||| ||| |||||||| || || || || || || || || ||||||||||| Sbjct 1707676 GTATCTGATGCTTCGACTTCTAAAGTTATCGTCTTCCCAGTTAACGTCTTCACGAATATT 1707617 Query 38313 TGCAT 38317 ||||| Sbjct 1707616 TGCAT 1707612 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| || |||||||||||||| | || | || ||||| || |||||| | Sbjct 1706617 CCTGCAAAAATAAGGCGTTGTTGATCTGGTGGTATTCCCTCTTTATCTTGTATTTTTGCC 1706558 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 |||||||| | || ||||| ||| || || | || || ||||| ||||| || Sbjct 1706557 TTCACATTTTCGATTGTATCGGAGGCTTCCACCTCAAGCGTTATTGTTTTGCCCGTTAAA 1706498 Query 38298 GTTTTCACGAATATCTGCAT 38317 ||||||||||| |||||||| Sbjct 1706497 GTTTTCACGAAAATCTGCAT 1706478 >seq385 Length=21578 Score = 102 bits (112), Expect = 5e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||||||| || || |||||||| || ||||| | |||||| || || ||| Sbjct 9551 CCAACTAAATATTTTGGATGTGAACTTGGTGCACAGACTAATTTTGATATGAAGAATGAG 9492 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || ||||||||||| ||| |||| | | |||||||| ||| |||| || || ||| Sbjct 9491 CGTTTCATCGTTAATGGAGAGCATGATGCGAATAAGCTGCAAGACATACTCGATGGGTTT 9432 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || | || ||||||||||| | | ||||| || ||||| || Sbjct 9431 ATCAGAAAATTTGTGCTGTGCGGCGCTTGCGAGAATCCGGAAAC 9388 >seq161 Length=136094 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38193 CGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACA 38252 || || || |||| || | ||||| |||||| ||| ||| ||| ||||||| | | Sbjct 38041 CGCTGCTGGTCGGGTGGAATTCCTTCCTTGTCCTGAATCTTTGCCTTGACATTCTCAATA 37982 Query 38253 GTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATC 38312 ||||| ||||||||| | ||| || || ||||| ||||| ||||||||||| ||| Sbjct 37981 GTATCCGATGCTTCAACTTCAAGTGTTATTGTCTTACCAGTCAATGTTTTCACGAAAATC 37922 Query 38313 TGCAT 38317 ||||| Sbjct 37921 TGCAT 37917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334941689071850