Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dracunculus_20medinensis_20[genbank_20GCA_5F000946415.1_202014-11- 13] 1,350 sequences; 103,750,844 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq51 96.9 4e-15 >seq51 Length=402594 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || || || || || |||| ||||| |||||||| ||| || || ||||| |||||| Sbjct 116520 CCGATTCCTCCAGCGCTTTTCGATATAAGAGCACATTTTTTCAGTGTCTCATAGATTCCT 116579 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTT 48602 ||||| ||||||||| ||| | | | ||||||| | |||||| || | || || Sbjct 116580 TCTATGCTATCATCTGACATCGTAAGCAAAAAACAAGAACTCATTTGTGGTTTGCATGTG 116639 Query 48603 CCTGAATTAAATAATGTTGGAGATGCATGAATAAACCA 48640 || |||||| | ||||||| |||||||||||||| Sbjct 116640 CCACTATTAAAAAGAGTTGGAGTGGCATGAATAAACCA 116677 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 48113 AGTATATAACTTCTCAAATTCATC-CCCATACACATTATCTAACCCAGGACATTCATTAG 48171 |||||| | || |||||||| || ||| ||| || || | || ||| ||||| || Sbjct 115713 AGTATAAAGTTTTTCAAATTCCTCTCCCCAACA-ATCTTCAAGTCCGGGAGATTCAGAAG 115771 Query 48172 GACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCC 48231 ||||||||| ||||||||| |||| | ||||||| |||| || | ||| || | || Sbjct 115772 GACACATCAGTGACCAATCACTATCACTGTTTACTCGGTTCATGAAAAGATCGGGAACCC 115831 Query 48232 AAAGAGCTATAAATAAATCCCTAGTTCTTAGTTC---TTCATTGCCACTATTCCTTTTAA 48288 | | | | | ||| | ||| | | | | || ||||| ||| ||| || | | Sbjct 115832 ATAAACCAAAAAAGAGATCTCGA---CAACGCTCCAATTCATCGCCGAAATTTTTTCTTA 115888 Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGC 48337 || ||| | || | ||||| |||||||||||||| ||||||||||| Sbjct 115889 AATCTAGATATTCAAAAATATCGGCATGCCATGGTTCCAAATATATTGC 115937 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 47697 AATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAAC 47756 |||| ||| || | |||||| || |||||||||||||||||||| ||||||||| Sbjct 114918 AATGCATCAGCAAGTCCTTGCACTCCAATACCAATTGGTCTATGGCGTTTATTAGATCTT 114977 Query 47757 TCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA 47804 | |||||| |||| |||||| || ||| |||| |||||||||| Sbjct 114978 TTAGCTTCCGGTACTGGATAAAAATTACCATCAATAACTTTATTTAGA 115025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562099314414000