Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dracunculus_20medinensis_20[genbank_20GCA_5F000946415.1_202014-11- 13] 1,350 sequences; 103,750,844 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq8 145 6e-29 seq185 98.7 8e-15 seq142 96.9 3e-14 seq2 96.9 3e-14 >seq8 Length=2239894 Score = 145 bits (160), Expect = 6e-29 Identities = 173/234 (74%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 550022 AGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAAC 550081 |||||||||||| ||| ||||||| ||| ||||| ||||| ||||||||||| || Sbjct 1578649 AGTTGTGTTGGTATTTACAAAAATGGACGAGTGGAAATCATTGCGAATGATCAAGGAAAT 1578708 Query 550082 AGAACTACTCCATCTTATGTTTCTTTCACGGAAACTG---AACATTTAGTTGGTGATGCA 550138 | | || || || |||||| | ||| ||| |||| ||| |||| |||||||| || Sbjct 1578709 CGTATCACACCTTCCTATGTTGCATTCCTGGAGACTGGTGAACGTTTAATTGGTGATCCA 1578768 Query 550139 GCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATT 550198 ||||| ||||| || ||||||| ||||| ||||||||||| ||||| |||||| Sbjct 1578769 GCAAAGAATCAACTAACCAGTAATCCAGAGAATACAATTTTTGATGCGAAACGATTAATT 1578828 Query 550199 GGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 ||||||| ||| |||| ||| | || || || |||| |||| || ||| Sbjct 1578829 GGAAGAATGTTTCGTGATGAAACTATACAAGCTGACTTGAAACATTTACCATTC 1578882 Score = 134 bits (148), Expect = 1e-25 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 |||| ||| | || || || |||||| | ||||||||| ||| || || | | Sbjct 1579069 CACCTGAAGAGATATCGTCGATGGTTCTTTCAAAAATGAAAGAAATTGCTGAAGCGTATT 1579128 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 | ||| || || | |||| |||||||| || ||||| ||||| | ||| |||||| Sbjct 1579129 TGGGTAAACCTGTGAAAAATGCTGTAATAACAGTGCCAGCTTATTTCACCGACGCACAAC 1579188 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 |||| || || ||||||||||| ||||||||| |||||||| |||| || || |||| Sbjct 1579189 GTCAGGCAACAAAAGATGCTGGGACTATTGCTGGTCTTAATGTAGTTCGAATCATAAATG 1579248 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||||| || ||||| |||| |||||| | ||||| Sbjct 1579249 AACCTACCGCAGCTGCTATTGCTTATGGATTGGATAA 1579285 Score = 104 bits (114), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || ||||||||||| || ||| || |||||| || |||| || || | Sbjct 1733788 AGACGAAGAACAAGATGAAGCGTCGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGC 1733729 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||||||||| ||||| ||||| || || | |||||||| || || || ||||| Sbjct 1733728 CCATCTTCAAGTTGCTTTCCCGCAAAGATCAGACGCTGCTGATCGGGTGGGATGCCTTCC 1733669 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || || || || |||||| ||| ||||| |||| | | | | | | | || Sbjct 1733668 TTGTCCTGGATCTTGGCTTTTACACTCTCTATTGTGTCAGAG-GCTTCGACTGCTAACGT 1733610 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || || ||||| |||||||||||||| Sbjct 1733609 AATTGTCTTGCCCGTCAGCGTTTTTACGAAAATTTGCAT 1733571 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || ||||||||||| || ||| || ||| || || |||| || || | Sbjct 1730493 AGACGAAGAACAAGATGAAGCGTCGATTCCTTCTGAATGTTATAGTCAGAAAGTGTGCGC 1730434 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||||||||| ||||| ||||| || || | |||||||| || || || ||||| Sbjct 1730433 CCATCTTCAAGTTGCTTTCCCGCAAAGATCAGACGCTGCTGATCGGGTGGGATGCCTTCC 1730374 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || || || || |||||| ||| ||||| |||| | | | | | | | || Sbjct 1730373 TTGTCCTGGATCTTGGCTTTTACACTCTCTATTGTGTCAGAG-GCTTCGACTGCTAACGT 1730315 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || || ||||| |||||||||||||| Sbjct 1730314 AATTGTCTTGCCCGTCAGCGTTTTTACGAAAATTTGCAT 1730276 Score = 93.3 bits (102), Expect = 3e-13 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | || ||||||||||| ||||||||||||||||||||||||||| Sbjct 1706278 TTACCCGCAAAAATCAATCGCTGCTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTT 1706219 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTACCAGT 563450 ||| || || |||||||| | || | | ||| | || | ||||||||||| Sbjct 1706218 GCTTTCACATTTTCGATTGTATCCG-ATGCCTCAACTTCTAACGTTATCGTTTTACCAGT 1706160 Query 563451 AAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| || || || |||||| Sbjct 1706159 TAACGTTTTCACAAAGATCTGCATA 1706135 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || ||||||||||| || ||| || ||| || || |||| || || | Sbjct 1707829 AGACGCAGAACAAGATGAAGAGTCGATTCCTTCTGAATGTTATAGTCAGAAAGCGTGCGC 1707770 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||| |||||||| ||||| || || | |||||||| || || || |||||| Sbjct 1707769 CCATCTTCAAGCTGTTTTCCCGCAAAGATCAGACGCTGCTGATCGGGTGGGATGCCTTCT 1707710 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 || || || || || ||| || ||||| ||||| | || || ||| | ||| Sbjct 1707709 TTGTCCTGGATCTTGGCTTTAACGTTTTCAATCGTATCTGATGCTTCGAC-TTCTAAAGT 1707651 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||| | || || ||||| |||||||| Sbjct 1707650 TATCGTCTTCCCAGTTAACGTCTTCACGAATATTTGCAT 1707612 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/127 (76%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 552495 TTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTC 552554 ||| ||||| ||| |||||||| |||||||| || || || |||||||||||||||||| Sbjct 1580476 TTTGATTTAACAGGAATTCCTCCAGCTCCTCGAGGTGTTCCTCAAATTGAAGTTACTTTC 1580535 Query 552555 GATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA---ATCTAGCAACAAG 552611 || || |||| ||||| || | |||| || ||| ||||| | || | || ||| Sbjct 1580536 GAAATTGATGTTAATGGTATACTACATGTAACAGCTGAAGATAAAGGAACTGGTAATAAG 1580595 Query 552612 AGTAAAA 552618 | ||||| Sbjct 1580596 AATAAAA 1580602 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||||||||| | ||||||||| || || || || || |||| ||||||||| | Sbjct 1729930 CCAGCAAAAATAAGGCGTTGCTGATCTGGTGGTATACCCTCCTTATACTGAATTTTTGCT 1729871 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGA 563454 || || |||||| ||||| | | | || | || | |||||||| ||||| Sbjct 1729870 TTCACATTCTCAATAGTATCCGATTCTTCAACCTCCAATGTTATCGTTTTACCGGTAAGC 1729811 Query 563455 GTTTTAACGAAAATTTGCAT 563474 ||||| |||||||||||||| Sbjct 1729810 GTTTTTACGAAAATTTGCAT 1729791 >seq185 Length=109727 Score = 98.7 bits (108), Expect = 8e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 |||||||| || |||| | || | ||| | || |||||||||||| || |||||| Sbjct 74891 ACTAAAGACAACAATCTTTTGGGGAAATTTGAATTGTCAGGTATTCCTCCGGCCCCTCGT 74832 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || || ||||| |||||||| |||||||| || ||||| || || || |||||||| || Sbjct 74831 GGTGTGCCGCAGATTGAAGTCACTTTCGACATTGATGCGAACGGTATATTGAATGTATCT 74772 Query 552588 GCTTGTGATAAATC 552601 || |||||||| Sbjct 74771 GCACAAGATAAATC 74758 Score = 95.1 bits (104), Expect = 1e-13 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || | || || || |||||||||||||| ||||| ||||||||||| || || Sbjct 76239 GGATGCTGTGGTGACCGTGCCGGCATATTTTAATGATTCACAGCGTCAAGCTACCAAGGA 76180 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || || || || | |||||||||||||| || ||||| || || || || || Sbjct 76179 TGCAGGGGCCATCGCGGGTTTGAATGTTCTTCGTATCATAAATGAGCCAACAGCCGCGGC 76120 Query 550516 ACTTGCATATGGACTTGATAAA 550537 | || || || | |||||| Sbjct 76119 TATCGCTTACGGTTTGGATAAA 76098 >seq142 Length=155666 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 368735 TTGATCACATTAAAATTCCATCAAAGAAAGGAAAAGGTTTATTGTCTCGAGTTGAAGGAG 368794 ||||| || ||||||||||| || | ||| ||| | | | ||||| || || Sbjct 113877 TTGATGGTATAAAAATTCCATCGAAAACAGGGCGTGGTGAACTATGCAGAGTTTCAGAAG 113936 Query 368795 TTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTTG 368854 |||| || |||||||| ||||||||||| |||||||||| ||||| || |||||||||| Sbjct 113937 TTTTTGACTGCTGGTTCGAATCAGGTTCAATGCCTTATGCTCAAAGGCACTATCCATTTG 113996 Query 368855 ATAACGCAAAATACTTTGATAATGAT 368880 | ||| ||| | |||||| || || Sbjct 113997 AAAACCTTAAAGAATTTGATGATAAT 114022 >seq2 Length=3890600 Score = 96.9 bits (106), Expect = 3e-14 Identities = 126/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 931137 GGTATGAAAGTAATTTTTATTGATGAGTTTGAAATTCCATTAATATTAGTTAAATCTGAT 931196 |||| ||||| || || | |||| | ||||| ||||||| |||| ||||||||| Sbjct 1431138 GGTAGAAAAGTCATGTTCGTCGATGGTTCAGAAATACCATTAACTATAGTAAAATCTGAT 1431197 Query 931197 GGAGGATTTACATATGATACCTCTGATTTAGCAGCCATTAAATATAGATTTATGGAA--- 931253 || || ||||| |||||||| |||||||| || | || ||| | |||| ||||| Sbjct 1431198 GGTGGTTTTACTTATGATACATCTGATTTGGCTACAATCAAACACAGAT---TGGAAGTG 1431254 Query 931254 CAAAAAGTAGATCGTGTAATTTATGTTGTGGATTCAGGTCAAAGTCAACATTT 931306 || ||| ||| | | ||||||||||| ||| | ||||| |||| ||||| Sbjct 1431255 GAAGAAGCTGATTGGTTGATTTATGTTGTTGATGCTGGTCAGAGTCTTCATTT 1431307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029224605911500