Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dracunculus_20medinensis_20[genbank_20GCA_5F000946415.1_202014-11- 13] 1,350 sequences; 103,750,844 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq8 136 3e-26 seq2 96.9 3e-14 seq185 87.8 1e-11 >seq8 Length=2239894 Score = 136 bits (150), Expect = 3e-26 Identities = 182/249 (73%), Gaps = 7/249 (3%) Strand=Plus/Minus Query 282610 AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 282669 || ||| || ||||| ||| ||||| || | ||| | | ||| ||| ||| ||| Sbjct 1578891 AAAAACCTTGAATGGTAAATGTTTCAAGTCAGCTTGTATAGTTTCATCACGAAACATTCT 1578832 Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG--CAGCTTGATAT 282727 |||||||||||||| ||||||||||| ||||| |||||| |||| || ||||| Sbjct 1578831 TCCAATTAATCGTTTCGCATCAAAAATTGTATTCTCTGGATT-ACTGGTTAG-TTGATTC 1578774 Query 282728 TTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATGGAGTT 282784 || |||| ||| ||||| | | ||| | ||||| |||| |||||| || || || Sbjct 1578773 TTTGCTGGATCACCAATTAAACGTTCACCAGTCTCCAGGAATGCAACATAGGAAGGTGTG 1578714 Query 282785 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 282844 | ||||| ||||||||||||||||| ||||| ||| ||||||| | | ||| ||| Sbjct 1578713 ATACGATTTCCTTGATCATTCGCAATGATTTCCACTCGTCCATTTTTGTAAATACCAACA 1578654 Query 282845 CAACTAAAA 282853 ||||| ||| Sbjct 1578653 CAACTGAAA 1578645 Score = 107 bits (118), Expect = 1e-17 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| | ||||| |||| |||||| || || |||||||| || |||| | ||| Sbjct 1579288 TTCTTATCCAATCCATAAGCAATAGCAGCTGCGGTAGGTTCATTTATGATTCGAACTACA 1579229 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 |||||||||||||| | || |||||||| || || || | ||||| ||| | ||||| Sbjct 1579228 TTAAGACCAGCAATAGTCCCAGCATCTTTTGTTGCCTGACGTTGTGCGTCGGTGAAATAA 1579169 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTT 282509 || || || || || || |||| | | || ||| || | ||| ||||| || ||| Sbjct 1579168 GCTGGCACTGTTATTACAGCATTTTTCACAGGTTTACCCAAATA--CGCTTCAGCAATTT 1579111 Query 282510 GTTTCATTTT 282519 ||||||||| Sbjct 1579110 CTTTCATTTT 1579101 Score = 91.5 bits (100), Expect = 1e-12 Identities = 168/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 281329 AGCTTCTCTAATCATTCTCTCAATTTGATCTTCAG---AGAATCTTCCGCGATTATTAGT 281385 ||| || ||||||||| ||||| |||||||| | ||||| ||| ||| || Sbjct 1580667 AGCATCATTAATCATTCGTTCAAT---ATCTTCAGGAGATAATCTGTTATGATCATTGGT 1580611 Query 281386 AATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACC 281445 |||||| || || || || ||| |||||| | || || |||| || ||||| Sbjct 1580610 AATAGTGATTTTATTCTTATTACCAGTTCCTTTATCTTCAGCTGTTACATGTAGTATACC 1580551 Query 281446 ATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGAT 281505 ||| |||| | || || || |||||||||||||| || |||| |||| || || || Sbjct 1580550 ATTAACATCAATTTCGAAAGTAACTTCAATTTGAGGAACACCTCGAGGAGCTGGAGGAAT 1580491 Query 281506 CCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTC 281565 ||| |||| ||| | |||| | | | |||||||| || | | |||||||| || Sbjct 1580490 TCCTGTTAAATCAAACTTGCCCAAAATGTGGTTATCTTTTGTCATTGGACGTTCACCTTC 1580431 Query 281566 GAAAA 281570 | ||| Sbjct 1580430 GTAAA 1580426 >seq2 Length=3890600 Score = 96.9 bits (106), Expect = 3e-14 Identities = 99/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| ||||| | || || || |||||||| ||| |||| || | |||| ||| | Sbjct 2299982 TGTACATTAATTGTAACTGAAGGGGATTCAGCCAAAGCATTAGCAGTTGCTGGTCTTTCT 2299923 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 |||||||||||||||||||||||| |||||| || ||||||| ||| | ||| | || Sbjct 2299922 ACTATTGGAAGAGATTATTATGGAGTATTCCCAATTCGAGGAAAGCTTATTAATACTCGG 2299863 Query 400417 GATGCTAG 400424 ||| |||| Sbjct 2299862 GAT-CTAG 2299856 >seq185 Length=109727 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| | ||| || || | ||| || || ||||| ||||| || || | | |||| Sbjct 76096 TTTTTATCCAAACCGTAAGCGATAGCCGCGGCTGTTGGCTCATTTATGATACGAAGAACA 76155 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | ||| || || |||||||| || || ||||| | |||||||| ||||||||| Sbjct 76156 TTCAAACCCGCGATGGCCCCTGCATCCTTGGTAGCTTGACGCTGTGAATCATTAAAATAT 76215 Query 282452 GCAGGAACAGTAATAACGGCATC 282474 || || || || | || ||||| Sbjct 76216 GCCGGCACGGTCACCACAGCATC 76238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740564120705100