Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1199 105 7e-18 seq271 86.0 6e-12 >seq1199 Length=19938 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||| || | |||| ||| |||||||| ||||||||||| |||||||| ||| ||| Sbjct 15169 TACCTGCGAAAATCAAACGCTGCTGATCTGGAGGTATGCCCTCTTTGTCCTGAATCTTTG 15228 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||| | | || | ||| |||| || ||| || |||| || | |||||| || |||| Sbjct 15229 CTTTCACATTCTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATCGTCTTACCAGTCA 15288 Query 143163 ATGTTTTTACGAATATTTGCATA 143185 ||||||| || |||||||||||| Sbjct 15289 ATGTTTTAACAAATATTTGCATA 15311 >seq271 Length=49288 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 143039 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 143098 || ||||| ||| | || ||||| |||||||| || || || ||||||||||| ||| Sbjct 36740 TGCTTACCGGCAAAAATAAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATC 36681 Query 143099 TTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158 || |||| | ||| | |||||| | | || ||||| | ||| | ||||||||| Sbjct 36680 TTGGCCTTTACATTTTCAATCGTGTCAGAAGCCTCAACTTCTAGAGTGATCGTCTTGCCT 36621 Query 143159 GTCAATGTTTTTACGAATATTTGCATA 143185 || || || || || || ||||||||| Sbjct 36620 GTTAACGTCTTCACAAAAATTTGCATA 36594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506963204220960