Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1199 125 2e-23 seq271 109 1e-18 seq100 107 4e-18 >seq1199 Length=19938 Score = 125 bits (138), Expect = 2e-23 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || ||||| | | ||| ||||| |||||||| || ||||| ||||||||||||||| Sbjct 15171 CCTGCGAAAATCAAACGCTGCTGATCTGGAGGTATGCCCTCTTTGTCCTGAATCTTTGCT 15230 Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 || ||||| || | ||||| | ||| ||| ||||| || ||||| ||||||||||| | Sbjct 15231 TTCACATTCTCAATCGTATC-CGAGGATTCGACCTCAAGCGTAATCGTCTTACCAGTCAA 15289 Query 104539 TGTTTTTACAAATATCTGCAT 104559 |||||| |||||||| ||||| Sbjct 15290 TGTTTTAACAAATATTTGCAT 15310 >seq271 Length=49288 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| ||||| | ||| ||||| || || |||||||| |||||||| || || || Sbjct 36324 CCGGCAAAGATTAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTTGGCC 36265 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | |||||| | || || || | |||||| || ||||||||||| Sbjct 36264 TTAACATTCTCGATGGTATCAGATGCCTCCACTTCCAATGTAATTGTTTTACCAGTAAGA 36205 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||||||||| || ||||| Sbjct 36204 GTTTTTACAAAAATTTGCAT 36185 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || ||||| || | || || ||||| || || || ||||||||||| ||||| || Sbjct 37065 CCCGCGAAAATAAGTCGTTGCTGGTCAGGTGGGATACCCTCTTTATCCTGGATCTTAGCC 37006 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||||| | ||| ||||| ||||| ||||| || ||||||||| Sbjct 37005 TTCACATTCTCGATCGTATCCGACGCTTCCACCTCCAGTGTTATAGTTTTGCCAGTAAGT 36946 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || ||||| |||||||| Sbjct 36945 GTCTTAACAAAAATCTGCAT 36926 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || |||||||| || | ||| ||||| || || ||||||||||| ||||||||| Sbjct 36740 TGCTTACCGGCAAAAATAAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATC 36681 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || ||||||||||| | || || || || || ||||| || || ||||| || Sbjct 36680 TTGGCCTTTACATTTTCAATCGTGTCAGAAGCCTCAACTTCTAGAGTGATCGTCTTGCCT 36621 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || ||||| || ||||| Sbjct 36620 GTTAACGTCTTCACAAAAATTTGCAT 36595 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| | | ||| ||||| || || || || |||||||| || || |||||| Sbjct 35918 CCAGCAAAAATCAAGCGCTGCTGATCTGGTGGAATACCCTCTTTATCTTGTATTTTTGCT 35859 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || || || ||| || || || || || ||||| || || | | Sbjct 35858 TTCACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGGGTGATCGTCTTTCCCGTCAAT 35799 Query 104540 GTTTTTACAAATATCTGCATTTT 104562 || ||||| || || ||||| || Sbjct 35798 GTCTTTACGAAGATTTGCATGTT 35776 >seq100 Length=72284 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| || | ||||||||||| || || || |||||||||||||| || Sbjct 23702 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGCGGAATGCCCTCTTTATCCTGAATTTTA 23643 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || |||||||| || | ||||| | ||| ||||| || || || || || ||||| Sbjct 23642 GCCTTTACATTCTCAATAGTATCAGACGATTCCACCTCAAGGGTGATTGTTTTTCCAGTT 23583 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | ||| || || ||||||||||||||| Sbjct 23582 AATGTCTTCACGAATATCTGCATTTTG 23556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151279230985224