Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2266 161 2e-35 seq910 158 2e-34 seq284 91.5 2e-14 >seq2266 Length=10127 Score = 161 bits (178), Expect = 2e-35 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||| | | | || || || || |||||||| || || ||||| || Sbjct 1976 GCTAAGCGTCATCGAAAAGTGTTGCGTGACAATATTCAAGGAATTACGAAACCAGCAATT 1917 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| ||||||||||| |||||| | ||||||||| | ||||| || | Sbjct 1916 CGACGTTTGGCTCGCCGTGGTGGAGTGAAGCGTATTTCTGGATTGATATATGAGGAAACA 1857 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||||| | ||||| | | ||||| | |||||| | ||| || Sbjct 1856 CGTGGCGTCTTGAAGGTATTCCTGGAAAATGTTATACGTGATGCAGTGACATATTGTGAA 1797 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||||||||||||| || || | ||||| | || ||||| || ||||| ||||| Sbjct 1796 CATGCTAAACGTAAGACGGTAACGGCTATGGACGTAGTTTATGCGTTAAAACGACAAGGT 1737 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||||| || || ||||| Sbjct 1736 CGAACGCTTTATGGATTCGGTGGTTAA 1710 >seq910 Length=24739 Score = 158 bits (174), Expect = 2e-34 Identities = 195/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | ||| || || ||||| |||||||| || || || |||||| Sbjct 3638 GCAAAGCGTCACCGTAAAGTTCTGCGCGACAACATTCAAGGAATAACAAAACCGGCTATC 3697 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| |||| || |||||||| || || ||| | || ||| | | ||||| || | Sbjct 3698 AGACGTTTGGCACGACGTGGTGGCGTAAAACGTATTTCGGGACTCATTTATGAGGAAACG 3757 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||||| | ||| | ||| || || | |||||| || ||| ||| Sbjct 3758 CGTGGCGTGTTGAAGGTTTTCTTGGAGAATGTGATACGCGATGCTGTCACTTATTGTGAG 3817 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||||| ||||| ||||| | |||||| | ||||| || ||||| |||||||| Sbjct 3818 CATGCGAAACGGAAGACAGTCACGGCAATGGATGTGGTCTACGCTTTGAAGCGTCAAGGG 3877 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | ||||||||||| ||||| Sbjct 3878 CGTACGCTGTATGGTTTTGGCGGTTAA 3904 >seq284 Length=48155 Score = 91.5 bits (100), Expect = 2e-14 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| ||||| | | |||| || |||||||||||||| || || ||||||||||| Sbjct 26074 GCTAAGCGCCATCGTAAAG-TCTTGCGTGATAACATCCAAGGTATAACGAAGCCAGCTAT 26016 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548 ||||| |||| ||||||||||| || ||||| | || || | | |||||||| Sbjct 26015 TCGTCGCTTGGCGCGTCGTGGTGGTGTGAAGCGAATTTCAGGTCTCATTTATGAAGA 25959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067814228054