Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq271 100 2e-16 seq1199 91.5 1e-13 seq100 87.8 2e-12 >seq271 Length=49288 Score = 100 bits (110), Expect = 2e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 22206 TACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGA 22265 |||| ||| ||| |||||||| || || || || || || || || ||| |||| ||||| Sbjct 35766 TACAATTGCAAACATGCAAATCTTCGTAAAGACATTGACGGGAAAGACGATCACCCTTGA 35825 Query 22266 AGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTAT 22325 ||||||| | | || || | || || | ||| |||||| ||||| || |||||||| Sbjct 35826 AGTGGAAGCTTCAGACACGATTGAAAATGTGAAAGCAAAAATACAAGATAAAGAGGGTAT 35885 Query 22326 TCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 |||||| ||||| || || | || ||||| || Sbjct 35886 TCCACCAGATCAGCAGCGCTTGATTTTTGCTGG 35918 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || ||||| || || ||| ||||||| ||||| || | | Sbjct 36595 ATGCAAATTTTTGTGAAGACGTTAACAGGCAAGACGATCACTCTAGAAGTTGAGGCTTCT 36654 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || ||||| ||||| || || |||||||| ||||| Sbjct 36655 GACACGATTGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 36714 Query 22339 CAACGTCTTATATTTGCCGGCAAACA 22364 || |||||||| |||||||| || || Sbjct 36715 CAGCGTCTTATTTTTGCCGGTAAGCA 36740 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | || |||||||| | || | |||||||| | | Sbjct 36185 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACAATTACATTGGAAGTGGAGGCATCT 36244 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||||| || || ||||| || |||||||| ||||| Sbjct 36245 GATACCATCGAGAATGTTAAGGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCAG 36304 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || || || |||||||| Sbjct 36305 CAGCGACTAATCTTTGCCGG 36324 >seq1199 Length=19938 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 22193 AGATATAGTTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAA 22252 |||||| ||||| || ||| | | ||||||| ||||||||||| || || ||||| | Sbjct 15332 AGATAT-GTTTTCTAGATTCATTA---TGCAAATATTTGTTAAAACATTGACTGGTAAGA 15277 Query 22253 CGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAG 22312 || | || ||||| || ||| || | ||||| | || || | ||| ||| ||||| | Sbjct 15276 CGATTACGCTTGAGGTCGAATCCTCGGATACGATTGAGAATGTGAAAGCAAAGATTCAGG 15217 Query 22313 ACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 |||| ||||| || || || ||||| || ||| | || || || || Sbjct 15216 ACAAAGAGGGCATACCTCCAGATCAGCAGCGTTTGATTTTCGCAGG 15171 >seq100 Length=72284 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || ||||| || ||||| |||| ||||| |||||| | Sbjct 23557 AAAATGCAGATATTCGTGAAGACATTAACTGGAAAAACAATCACCCTTGAGGTGGAATCG 23616 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || |||||||| || || ||||| ||||| || ||| Sbjct 23617 TCTGATACTATTGAGAATGTAAAGGCTAAAATTCAGGATAAAGAGGGCATTCCGCCTGAT 23676 Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361 |||||||| ||||| || || || || Sbjct 23677 CAACAACGACTTATTTTCGCAGGTAA 23702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419686677516070