Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq24 141 4e-28 seq467 140 1e-27 seq100 102 3e-16 seq271 93.3 2e-13 >seq24 Length=111638 Score = 141 bits (156), Expect = 4e-28 Identities = 200/276 (72%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 452219 ATTCAAGTGTTT--GAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAAT 452276 |||| || |||| ||||| |||||||| |||||| |||| || || || || ||| Sbjct 50435 ATTCCAG-GTTTACGAAGGTGAACGTGCGATGACAAGAGACAACAACTTGCTGGGCAAAT 50493 Query 452277 TTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATG 452336 | ||||| ||||| ||| || | || || ||||| ||| |||| | || Sbjct 50494 TCGAACTTTCTGGAATTCCACCTGCTCCTCGTGGTGTGCCACAAATCGAAGTTACATTTG 50553 Query 452337 ATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAG 452396 | ||||||||||||||||| | ||||| |||| || ||||| | || || || Sbjct 50554 ACATTGATGCAAATGGTATTTTGAATGTCTCTGCACAGGATAAATCCACAGG-CAAGCAC 50612 Query 452397 AA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATG 452455 || ||||||||||| || || |||||| |||||| || || || || || ||||||||| Sbjct 50613 AACAAAATTACAATCACCAACGATAAAGGCCGTTTGTCAAAGGACGAAATCGAAAAAATG 50672 Query 452456 GTAGATGAAGCAGAAAAATTCAAGGATGATGATGAA 452491 ||| | ||||| ||||||| ||||| |||||| ||| Sbjct 50673 GTACAGGAAGCCGAAAAATACAAGGCTGATGACGAA 50708 Score = 132 bits (146), Expect = 2e-25 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 |||||||| || || ||||| || | || ||||||||||||||||||||||| |||| Sbjct 53866 TATAAAGGCGAGACAAAAACCTTCACGCCAGAAGAAATTTCATCTATGGTTCTGGTTAAA 53925 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| ||||| || || || | | ||| | | || | ||||| || || || || Sbjct 53926 ATGAAGGAAACGGCTGAGGCATTTCTCGGTCATGCGGTCAAGGATGCGGTTATCACAGTC 53985 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 ||||| || || || || |||| || ||||| || |||||| | || ||||| ||| Sbjct 53986 CCCGCGTACTTTAACGACTCACAGCGACAAGCGACCAAAGATTCTGGCGCAATTGCGGGT 54045 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 | || || | || || || || ||||| ||||| |||||| | || || || |||| Sbjct 54046 CTGAACGTCTTACGTATCATCAACGAACCGACAGCGGCTGCTATTGCTTACGGTCTAG 54103 Score = 114 bits (126), Expect = 5e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| ||| | || || || |||||||| || ||| | ||||| ||||||||||||||| Sbjct 48884 GATGCCGTAGTAACCGTGCCAGCTTATTTTAACGATTCTCAACGACAAGCAACTAAAGAT 48943 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || ||| |||||||| | || ||||| ||||| || |||||||| || ||||||||| Sbjct 48944 GCGGGAGCCATTGCTGGCCTGAACGTTCTCCGAATCATCAATGAACCAACTGCAGCTGCT 49003 Query 451439 CTAGCATATGG 451449 | || ||||| Sbjct 49004 ATTGCGTATGG 49014 >seq467 Length=38392 Score = 140 bits (154), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 451231 TAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGC 451290 |||||| || ||||||||||| || ||| | |||||||| ||||||||||||| || Sbjct 32685 TAAAACCTTCGCTCCTGAAGAGATATCAGCAATGGTTCTCGGAAAAATGAAAGAAATTGC 32744 Query 451291 AGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAA 451350 ||| |||| | || ||| | |||| || | || || || ||||| || || Sbjct 32745 TGAAGCATATTTGGGAAAGGAAGTGAAACATGCGGTTGTCACGGTACCTGCTTACTTTAA 32804 Query 451351 TGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCG 451410 |||||| ||||| ||||| ||||||||||| || |||||| ||| | |||||| | || Sbjct 32805 TGATGCTCAACGTCAAGCTACTAAAGATGCTGGTACTATTGCCGGTCTCAATGTTGTCCG 32864 Query 451411 AATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 ||||| ||||||||||| || || ||| | || || || || ||| || Sbjct 32865 TATTATCAATGAACCTACGGCTGCCGCTATCGCTTACGG-CTTGGATAA 32912 Score = 93.3 bits (102), Expect = 2e-13 Identities = 162/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||| |||||||||||||||||||| || ||||| || || | | || | |||| Sbjct 33939 AATCCGGATGAAGCTGTTGCATATGGCGCAGCAGTCCAGGCTGGTGTTAT------TTCA 33992 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | || |||| || |||||| | || | ||||| | ||| | |||||||| || Sbjct 33993 GGCGAAGAAAGCACTGGTGATATTGTATTGTTGGATGTGAATCCTTTGACTCTTGGAATT 34052 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAA 452170 |||||| |||||| | ||||| || | ||| || || ||| ||| ||| || Sbjct 34053 GAAACAATTGGTGGTGTTATGACCAAACTTATTCAAAGAAACACTGTTATCCCTACCAAG 34112 Query 452171 AAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226 |||||||| | || ||| ||| |||||| || ||| || || ||||| || Sbjct 34113 AAGAGTCAGATCTTCTCTACGGCAGCTGATAATCAGCCAACAGTCACCATTCAGGT 34168 >seq100 Length=72284 Score = 102 bits (112), Expect = 3e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || ||| | ||||| ||||| || || ||||| || ||||| || Sbjct 23559 AATGCAGATATTCGTGAAGACATTAACTGGAAAAACAATCACCCTTGAGGTGGAATCGTC 23618 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | || |||||||| ||||| || || ||||| |||||||| Sbjct 23619 TGATACTATTGAGAATGTAAAGGCTAAAATTCAGGATAAAGAGGGCATTCCGCCTGATCA 23678 Query 391169 ACAACGTTTAATTTTCTCAGGGAA 391192 |||||| | |||||| |||| || Sbjct 23679 ACAACGACTTATTTTCGCAGGTAA 23702 >seq271 Length=49288 Score = 93.3 bits (102), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || ||||||||||| ||||| | || || || ||||| Sbjct 36185 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACAATTACATTGGAAGTGGAGGCATCT 36244 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | |||| ||||| || ||||||||||||||||| || ||||| Sbjct 36245 GATACCATCGAGAATGTTAAGGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCAG 36304 Query 391170 CAACGTTTAATTTT 391183 || || |||| || Sbjct 36305 CAGCGACTAATCTT 36318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975513914380424