Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq24 159 3e-33 seq467 122 7e-22 >seq24 Length=111638 Score = 159 bits (176), Expect = 3e-33 Identities = 259/370 (70%), Gaps = 7/370 (2%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || ||||| || |||| |||||| || || ||||| || || || | || || Sbjct 54110 TTTTTGTCTAGACCGTAAGCAATAGCAGCCGCTGTCGGTTCGTTGATGATACGTAAGACG 54051 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||| |||||| || | |||||| || ||||||| ||||| |||||||| || Sbjct 54050 TTCAGACCCGCAATTGCGCCAGAATCTTTGGTCGCTTGTCGCTGTGAGTCGTTAAAGTAC 53991 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || || ||||| ||||| | || | | ||| | | | || ||||||| Sbjct 53990 GCGGGGACTGTGATAACCGCATCCTTGACCGCATGACCGAGAAATGCCTCAGCCGTTTCC 53931 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG--AATATTGCTTGGATTCAT 518402 ||||||||| | || ||| |||||||||| |||||| | || || || | || Sbjct 53930 TTCATTTTAACCAGAACCATAGATGAAATTTCTTCTGGCGTGAAGGTT--TTTGTCTCGC 53873 Query 518403 TTTGATATGATACTTCAAAATATGGTTTATTACCAACA---TTAATAACTTTAAATGGCC 518459 || |||| || | | | ||||||| |||| || || || ||||| ||||||| Sbjct 53872 CTTTATATTCAACCTGCACTTTTGGTTTACCACCACCAGCGTTCATGACTTTGAATGGCC 53813 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 ||| ||||||||||| || || | |||| ||| | | ||| || |||||||| | Sbjct 53812 AGTGCTTCATATCTGACTGTACCGATGCATCATCAAATTTACGACCGATCAATCGTTTAG 53753 Query 518520 CATCAAAAAT 518529 |||| |||| Sbjct 53752 CATCTGAAAT 53743 Score = 141 bits (156), Expect = 7e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| | ||||||||||| |||||| |||||||||||||| || |||| | ||| Sbjct 49026 TTTTTATCTAAACCATACGCAATAGCAGCTGCAGTTGGTTCATTGATGATTCGGAGAACG 48967 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| ||| ||||||||||| ||||||| ||| |||||||||||||| Sbjct 48966 TTCAGGCCAGCAATGGCTCCCGCATCTTTAGTTGCTTGTCGTTGAGAATCGTTAAAATAA 48907 Query 518285 GCAGGAACAGTAATAACGGCATC 518307 || || || || | |||||||| Sbjct 48906 GCTGGCACGGTTACTACGGCATC 48884 Score = 86.0 bits (94), Expect = 5e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 518540 GGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAAT 518599 ||||| || ||| |||||| |||||||||||| |||||||| |||| || || |||||| Sbjct 53559 GGATTCATCGCAACTTGATTTTTGGCTGCATCACCAATCAGTCGTTCAGTATCAGTAAAT 53500 Query 518600 GAAACATATGATGGAGTTGTGCGATTACCT 518629 | ||||| || || ||||| || |||||| Sbjct 53499 GCGACATACGACGGTGTTGTTCGGTTACCT 53470 Score = 86.0 bits (94), Expect = 5e-11 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCT 517482 || || || |||||||||||||| | |||| ||| |||| ||||| || || || | Sbjct 55260 TGGTTGTCGGAATAAGTTGTAAA-AGTCTGAGATGTTTTTGTGGGAATGGTAGTATTCCG 55202 Query 517483 ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 517542 | |||| | ||||| | ||| ||||||||||| | |||||| ||||| || | ||| Sbjct 55201 TTTGATAAGAGCAGTCATGACACCGCCTGCTGTTTCAATACCAAGTGAAAGCGGTGCGAC 55142 Query 517543 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTT 517601 || | ||| | | | ||| | ||| | | || | |||| |||||||||||||| Sbjct 55141 GTCGAGTAGTAACAAGTCTTGCACAGCTTC-TGACTTATCACCAGAAAGAATAGCTGCTT 55083 Query 517602 GAATAGCAGCACCATATGCAACAGC 517626 | | || ||||| || || ||||| Sbjct 55082 GTACTGCTGCACCGTACGCCACAGC 55058 >seq467 Length=38392 Score = 122 bits (134), Expect = 7e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||| ||| || ||||| | || || || | ||| ||||| || |||||||| ||||| Sbjct 32924 TTGCCTTCCTTCTTATCCAAGCCGTAAGCGATAGCGGCAGCCGTAGGTTCATTGATAATA 32865 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | | |||||| ||||| ||||| | || ||||||||||| ||||| | ||| | ||| Sbjct 32864 CGGACAACATTGAGACCGGCAATAGTACCAGCATCTTTAGTAGCTTGACGTTGAGCATCA 32805 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 ||||| || ||||| || || | ||| |||| | ||||| || || | ||| || Sbjct 32804 TTAAAGTAAGCAGGTACCGTGACAACCGCATGTTTCACTTCCTTTCCCAAATATGCTTCA 32745 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 || ||| ||||||||| | | || ||||| ||| || | ||| || Sbjct 32744 GCAATTTCTTTCATTTTTCCGAGAACCATTGCTGATATCTCTTCAGG 32698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780421543031068