Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq24 150 1e-30 seq467 127 2e-23 seq271 105 5e-17 seq275 89.7 4e-12 >seq24 Length=111638 Score = 150 bits (166), Expect = 1e-30 Identities = 260/370 (70%), Gaps = 11/370 (3%) Strand=Plus/Plus Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 |||| ||||||||||| || || || | | ||| ||||| | | || ||| ||||| Sbjct 53743 ATTTCAGATGCTAAACGATTGATCGGTCGTAAATTTGATGATGCATCGGTACAGTCAGAT 53802 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAA---TGTTTCTGGAAAACCTTATATTGAAGCT 550291 |||||||| ||||| ||| || | | || || | ||| ||||| | | || || | Sbjct 53803 ATGAAGCACTGGCCATTCAAAGTCATGAACGCTGGTGGTGGTAAACCAAA-AGTGCAGGT 53861 Query 550292 --ACTCATGAAGGATCTGTTAAACAATTTTCAC--CAGAACAAATTTCATCTATGGTTTT 550347 | | || |||| | ||| || ||||| ||||| ||||||||||||||||| | Sbjct 53862 TGAAT-ATAAAGGCGA-GACAAA-AACCTTCACGCCAGAAGAAATTTCATCTATGGTTCT 53918 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | |||||||| |||| || || ||| | ||||| | || | |||||| || || Sbjct 53919 GGTTAAAATGAAGGAAACGGCTGAGGCATTTCTCGGTCATGCGGTCAAGGATGCGGTTAT 53978 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || || || || || ||||| |||||||| || ||||| || |||||| |||| || Sbjct 53979 CACAGTCCCCGCGTACTTTAACGACTCACAGCGACAAGCGACCAAAGATTCTGGCGCAAT 54038 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||| || || || || | ||||| ||||| ||||| || || ||||| |||| || || Sbjct 54039 TGCGGGTCTGAACGTCTTACGTATCATCAACGAACCGACAGCGGCTGCTATTGCTTACGG 54098 Query 550528 ACTTGATAAA 550537 || || ||| Sbjct 54099 TCTAGACAAA 54108 Score = 131 bits (144), Expect = 1e-24 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| ||| |||| || ||||| |||||||| || || ||||| ||||| |||||||| Sbjct 48883 GGATGCCGTAGTAACCGTGCCAGCTTATTTTAACGATTCTCAACGACAAGCAACTAAAGA 48942 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| ||| |||||||| || || ||||| || || ||||||||||| ||||| ||||| Sbjct 48943 TGCGGGAGCCATTGCTGGCCTGAACGTTCTCCGAATCATCAATGAACCAACTGCAGCTGC 49002 Query 550516 ACTTGCATATGGACTTGATAAA 550537 |||| ||||| | |||||| Sbjct 49003 TATTGCGTATGGTTTAGATAAA 49024 Score = 91.5 bits (100), Expect = 1e-12 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || ||||| |||||||||||||| || || ||||| |||||||| || || || ||||| Sbjct 50505 GGAATTCCACCTGCTCCTCGTGGTGTGCCACAAATCGAAGTTACATTTGACATTGATGCA 50564 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||||| ||||||||||| |||| |||||||| Sbjct 50565 AATGGTATTTTGAATGTCTCTGCACAGGATAAATC 50599 Score = 91.5 bits (100), Expect = 1e-12 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498 |||| ||| |||||| ||| | | || ||||| |||||| ||||||| || Sbjct 55365 TTCAGGTTTATGAAGGTGAACGTGCTATGACCAAAGACAATAATTTGCTTGGTAAATTCG 55424 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 | | || ||||| ||||||||||| || || || ||||||||||||||||| |||| Sbjct 55425 AGCTGTCTGGCATTCCGCCTGCTCCTCGCGGTGTTCCACAAATTGAAGTTACTTTTGATA 55484 Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATCTA 552603 | || || || || ||||| ||||| |||| || ||||||| Sbjct 55485 TTGACGCGAACGGTATTTTAAATGTTTCTGCGCAGGACAAATCTA 55529 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 552220 AGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACA-AACTGATGAA 552278 ||||||| || || ||||| ||| | |||||||||||||||||||| | || | | ||| Sbjct 55056 AGGCTGTGGCGTACGGTGCAGCAGTACAAGCAGCTATTCTTTCTGGTGATAAGTCA-GAA 55114 Query 552279 AAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTT 552338 | ||| | | |||| | || || | || || || |||||| | ||||||| Sbjct 55115 GCTGTGCAAGACTTGTTACTACTCGACGTCGCACCGCTTTCACTTGGTATTGAAACAGCA 55174 Query 552339 GGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGT 552398 || ||| | |||||| ||||||| | | |||||||| ||||| |||| ||||| Sbjct 55175 GGCGGTGTCATGACTGCTCTTATCAAACGGAATACTACCATTCCCACAAAAACATCTCAG 55234 Query 552399 GTATTTTCTACGTATTCAGATAATCAAACTGCTGT 552433 ||| | || ||||| || || || ||| ||| Sbjct 55235 ACTTTTACAACTTATTCCGACAACCAGCCTGGTGT 55269 >seq467 Length=38392 Score = 127 bits (140), Expect = 2e-23 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || ||| | || ||| | |||||| | ||||||||| ||| || || | | | Sbjct 32698 CCTGAAGAGATATCAGCAATGGTTCTCGGAAAAATGAAAGAAATTGCTGAAGCATATTTG 32757 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || | ||||| | |||| || | || ||||| || || |||||||| | |||||| Sbjct 32758 GGAAAGGAAGTGAAACATGCGGTTGTCACGGTACCTGCTTACTTTAATGATGCTCAACGT 32817 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 |||||||||||||||||||| |||||| || || |||||| | ||||||||||||||| Sbjct 32818 CAAGCTACTAAAGATGCTGGTACTATTGCCGGTCTCAATGTTGTCCGTATTATCAATGAA 32877 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| ||||| || | || || || | ||||| Sbjct 32878 CCTACGGCTGCCGCTATCGCTTACGGCTTGGATAA 32912 Score = 104 bits (114), Expect = 2e-16 Identities = 167/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 550019 TATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGT 550078 || |||||||| || |||| | ||||| ||| ||||| ||||||||||| |||||| Sbjct 32302 TACAGTTGTGTCGGCGTTTATAAGAATGGACGAGTGGAAATCATTGCCAATGAACAAGGT 32361 Query 550079 AACAGAACTACTCCATCTTATGTTTCTTTCAC-GGAAAC-----TGAACATTTAGTTGGT 550132 || | | || || || || || | ||||| || | ||||| | | ||||| Sbjct 32362 AATCGTATCACGCCGTCGTACGTAGCGTTCACTGGTGATGGTGGTGAACGTCTTATTGGT 32421 Query 550133 GATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGT 550192 || ||||| ||| | || || ||||| |||||| | ||||||| ||| ||| Sbjct 32422 GACGCAGCCAAAAACCAGTTAACAACAAATCCGGAAAATACTGTGTTTGATGTTAAGCGT 32481 Query 550193 TTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTT 550251 || ||||| | | ||| ||||||||||| ||| |||||| || ||||||||||| Sbjct 32482 TTGATTGGCCGGGAGTATAAGGATTCGACTGTGCAGCAAGATATTAAACATTGGCCTTT 32540 >seq271 Length=49288 Score = 105 bits (116), Expect = 5e-17 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 |||||||| || |||| |||||||| || ||||||||||| ||||| || ||||| Sbjct 36324 CCGGCAAAGATTAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTTGGCC 36265 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| || ||||||| || | || ||| | |||| |||||||||||||| Sbjct 36264 TTAACATTCTCGATGGTATCAG-ATGCCTCCACTTCCAATGTAATTGTTTTACCAGTAAG 36206 Query 563454 AGTTTTAACGAAAATTTGCATA 563475 |||||| || |||||||||||| Sbjct 36205 AGTTTTTACAAAAATTTGCATA 36184 >seq275 Length=48975 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 368737 GATCACATTAAAATTCCATCAAAGAAAGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTT 368796 |||||||||| ||| |||||| | || || | ||| ||||||| | |||| Sbjct 41057 GATCACATTACAATACCATCATCTACTGGTCGTGGCGTGTTGCATCGAGTTAGCGAAGTT 41116 Query 368797 TTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTTGA 368855 || ||||||||||||||||| ||||| |||||||||| ||||| ||||| ||||| || Sbjct 41117 TTCGATTGCTGGTTTGAATCTGGTTCAATGCCTTATGCTCAAAACCATTACCCATTCGA 41175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028868798928220