Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq467 141 6e-28 seq24 132 3e-25 seq271 91.5 1e-12 >seq467 Length=38392 Score = 141 bits (156), Expect = 6e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 474659 CCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTT 474718 || ||| | || || |||||||| | | ||||||||| ||| || ||||| | Sbjct 32698 CCTGAAGAGATATCAGCAATGGTTCTCGGAAAAATGAAAGAAATTGCTGAAGCATATTTG 32757 Query 474719 GGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGT 474778 ||| | ||||| | |||| || | || || || || || ||||||||| |||||||| Sbjct 32758 GGAAAGGAAGTGAAACATGCGGTTGTCACGGTACCTGCTTACTTTAATGATGCTCAACGT 32817 Query 474779 CAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAA 474838 ||||| ||||||||||| || | ||||| ||||| |||||| | |||||||| |||||| Sbjct 32818 CAAGCTACTAAAGATGCTGGTACTATTGCCGGTCTCAATGTTGTCCGTATTATCAATGAA 32877 Query 474839 CCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || || ||||| | ||||| || | |||||||| Sbjct 32878 CCTACGGCTGCCGCTATCGCTTACGGCTTGGATAAGAA 32915 Score = 98.7 bits (108), Expect = 6e-15 Identities = 169/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 474355 TTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGG 474414 |||||||||||| | |||| | ||||| ||| ||||| ||||||||||| ||||| Sbjct 32301 TTACAGTTGTGTCGGCGTTTATAAGAATGGACGAGTGGAAATCATTGCCAATGAACAAGG 32360 Query 474415 TAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTG------AACATCTTATTGG 474468 |||| | | || || || || || | || |||| || ||| ||||||||| Sbjct 32361 TAATCGTATCACGCCGTCGTACGTAGCGTTCACTGGTGATGGTGGTGAACGTCTTATTGG 32420 Query 474469 AGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAG 474528 || || || ||| | || || | ||||| | |||||| | ||||||| ||| | Sbjct 32421 TGACGCAGCCAAAAACCAGTTAACAACAAATCCGGAAAATACTGTGTTTGATGTTAAGCG 32480 Query 474529 ATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTT 474588 |||||||| || | | | | ||| | ||||| || ||||| ||||||||||| Sbjct 32481 TTTGATTGGCCGGGAGTATAAGGATTCGACTGTGCAGCAAGATATTAAACATTGGCCTTT 32540 Query 474589 TAAGGT 474594 ||| || Sbjct 32541 TAATGT 32546 Score = 95.1 bits (104), Expect = 8e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 290843 GCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCT 290902 || || || |||||||| ||||| | | |||| ||||| ||||| | | | |||| Sbjct 32888 GCAGCCGTAGGTTCATTGATAATACGGACAACATTGAGACCGGCAATAGTACCAGCATCT 32829 Query 290903 AAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCtttttcc 290962 ||| || || ||||| ||||||||||| |||||||| || || | ||| || | || | Sbjct 32828 TTAGTAGCTTGACGTTGAGCATCATTAAAGTAAGCAGGTACCGTGACAACCGCATGTTTC 32769 Query 290963 actttctttttcaaataattttctgccatttgttttattt 291002 |||| |||| |||||| ||| || |||| ||| |||| Sbjct 32768 ACTTCCTTTCCCAAATATGCTTCAGCAATTTCTTTCATTT 32729 >seq24 Length=111638 Score = 132 bits (146), Expect = 3e-25 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| ||| | || || ||||| |||||||| ||||||||||| ||||||||||||||| Sbjct 48884 GATGCCGTAGTAACCGTGCCAGCTTATTTTAACGATTCTCAACGACAAGCAACTAAAGAT 48943 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 |||||| ||||| || || || ||| | || || || ||||||||||| ||||| || Sbjct 48944 GCGGGAGCCATTGCTGGCCTGAACGTTCTCCGAATCATCAATGAACCAACTGCAGCTGCT 49003 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 |||| |||||| | ||||| || Sbjct 49004 ATTGCGTATGGTTTAGATAAAAA 49026 Score = 95.1 bits (104), Expect = 8e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||||||| | | || ||||| ||||| ||||| | || | || || Sbjct 55375 TGAAGGTGAACGTGCTATGACCAAAGACAATAATTTGCTTGGTAAATTCGAGCTGTCTGG 55434 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||||| |||||||| | || ||||| |||||||||||||||||||||||||| || || Sbjct 55435 CATTCCGCCTGCTCCTCGCGGTGTTCCACAAATTGAAGTTACTTTTGATATTGACGCGAA 55494 Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAAATCTA 476186 |||||| | |||||| |||| || ||||||| Sbjct 55495 CGGTATTTTAAATGTTTCTGCGCAGGACAAATCTA 55529 Score = 86.0 bits (94), Expect = 4e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| |||||||| | || || || ||||| |||||||| ||||| ||||||||| Sbjct 50505 GGAATTCCACCTGCTCCTCGTGGTGTGCCACAAATCGAAGTTACATTTGACATTGATGCA 50564 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 ||||||||| | ||||| |||| |||||||| Sbjct 50565 AATGGTATTTTGAATGTCTCTGCACAGGATAAATC 50599 >seq271 Length=49288 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| || |||||||||||||| || ||||| || ||||||||||| ||||| |||||| Sbjct 36740 TGCTTACCGGCAAAAATAAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATC 36681 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || || ||| |||||| || |||| | | || ||| || || || || || || Sbjct 36680 TTGGCCTTTACATTTTCAATCGTGTCAGAAGCCTCAA-CTTCTAGAGTGATCGTCTTGCC 36622 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || | ||||| || |||||||| Sbjct 36621 TGTTAACGTCTTCACAAAAATTTG 36598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267832695385544