Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq271 123 4e-23 seq100 96.9 6e-15 seq1199 91.5 3e-13 >seq271 Length=49288 Score = 123 bits (136), Expect = 4e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||||||||| | | ||| ||||| || || ||||||||||| || || || Sbjct 36740 TGCTTACCGGCAAAAATAAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATC 36681 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| |||| |||| ||| || || |||| ||||||||||||||| || || || ||| Sbjct 36680 TTGGCCTTTACATTTTCAATCGTGTCAGAAGCCTCAACTTCTAGAGTGATCGTCTTGCCT 36621 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 |||| ||| || ||||| |||||||| Sbjct 36620 GTTAACGTCTTCACAAAAATTTGCAT 36595 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 |||||||| |||| || ||| ||||| || || |||||||| ||||| || ||||||| Sbjct 36324 CCGGCAAAGATTAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTTGGCC 36265 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| || ||||| || | ||| ||||| | || || |||||||| || || Sbjct 36264 TTAACATTCTCGATGGTATCAGATGCCTCCACTTCCAATGTAATTGTTTTACCAGTAAGA 36205 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||||||||| |||||||| Sbjct 36204 GTTTTTACAAAAATTTGCAT 36185 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| || | ||| ||||| || || || || ||||||||||||||||| | | Sbjct 35918 CCAGCAAAAATCAAGCGCTGCTGATCTGGTGGAATACCCTCTTTATCTTGTATTTTTGCT 35859 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| ||| || || |||| || ||||| || || || || || || || | Sbjct 35858 TTCACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGGGTGATCGTCTTTCCCGTCAAT 35799 Query 193341 GTTTTTACAAATATTTGCATTTT 193363 || ||||| || |||||||| || Sbjct 35798 GTCTTTACGAAGATTTGCATGTT 35776 >seq100 Length=72284 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || ||||| | || ||||||||||| || || || |||||||| || ||||| Sbjct 23702 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGCGGAATGCCCTCTTTATCCTGAATTTTA 23643 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | |||| ||| ||||||||| || || || || || || || || ||||| || ||| Sbjct 23642 GCCTTTACATTCTCAATAGTATCAGACGATTCCACCTCAAGGGTGATTGTTTTTCCAGTT 23583 Query 193338 AGCGTTTTTACAAATATTTGCATTTT 193363 | || || || ||||| |||||||| Sbjct 23582 AATGTCTTCACGAATATCTGCATTTT 23557 >seq1199 Length=19938 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || || ||||| || | ||| ||||| |||||||| || ||||| || || || || | | Sbjct 15171 CCTGCGAAAATCAAACGCTGCTGATCTGGAGGTATGCCCTCTTTGTCCTGAATCTTTGCT 15230 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| ||| ||||| || || || || || || || || || ||||| || | Sbjct 15231 TTCACATTCTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATCGTCTTACCAGTCAAT 15290 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| |||||||||||||| Sbjct 15291 GTTTTAACAAATATTTGCAT 15310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899563557396960