Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq100 114 3e-20 seq271 93.3 8e-14 >seq100 Length=72284 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| || || || | || ||||||||||| || || || |||||||| || |||||| Sbjct 23702 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGCGGAATGCCCTCTTTATCCTGAATTTTA 23643 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||||||| |||| ||| |||||||| || || || || || ||||| |||||| Sbjct 23642 GCCTTTACATTCTCAATAGTATCAGACGATTCCACCTCAAGGGTGATTGTTTTTCCAGTT 23583 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 ||||| || | |||||||||||||| Sbjct 23582 AATGTCTTCACGAATATCTGCATTTT 23557 >seq271 Length=49288 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| |||||||||| || ||| ||||| ||||| |||||||| ||||| || ||||| Sbjct 36325 ACCGGCAAAGATTAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTTGGC 36266 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 || ||||| || | ||| || | || ||||| | ||||| ||||||||||| | Sbjct 36265 CTTAACATTCTCGATGGTATCAGATGCCTCCACTTCCAATGTAATTGTTTTACCAGTAAG 36206 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||| Sbjct 36205 AGTTTTTACAAAAATTTGCAT 36185 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || || | ||| ||||| ||||| || || ||||||||||||||||| Sbjct 35920 TACCAGCAAAAATCAAGCGCTGCTGATCTGGTGGAATACCCTCTTTATCTTGTATTTTTG 35861 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||| ||||| || | ||||| | ||| ||||| || || || || || || || | Sbjct 35860 CTTTCACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGGGTGATCGTCTTTCCCGTCA 35801 Query 192515 ATGTTTTAATAAATATCTGCATTTT 192539 |||| || | || || ||||| || Sbjct 35800 ATGTCTTTACGAAGATTTGCATGTT 35776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984378106935300