Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq100 123 5e-23 seq271 100 5e-16 >seq100 Length=72284 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| || ||||| | || ||||| ||||| || || || |||||||| || |||||| Sbjct 23702 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGCGGAATGCCCTCTTTATCCTGAATTTTA 23643 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 |||||||| |||||||| |||||||| || || || || || ||||| |||||| Sbjct 23642 GCCTTTACATTCTCAATAGTATCAGACGATTCCACCTCAAGGGTGATTGTTTTTCCAGTT 23583 Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072 ||||| || | ||||||||||||||| Sbjct 23582 AATGTCTTCACGAATATCTGCATTTT 23557 >seq271 Length=49288 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| || | ||| || || ||||| || || ||||||||||||||||| Sbjct 35920 TACCAGCAAAAATCAAGCGCTGCTGATCTGGTGGAATACCCTCTTTATCTTGTATTTTTG 35861 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || || ||||| | ||| ||||| || || || || || || || | Sbjct 35860 CTTTCACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGGGTGATCGTCTTTCCCGTCA 35801 Query 172048 ATGTTTTAATGAATATCTGCATTTT 172072 |||| || | ||| || ||||| || Sbjct 35800 ATGTCTTTACGAAGATTTGCATGTT 35776 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| || ||||| | || || ||||||||||| || || |||||||| || || ||| Sbjct 37066 ACCCGCGAAAATAAGTCGTTGCTGGTCAGGTGGGATACCCTCTTTATCCTGGATCTTAGC 37007 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 || ||||| || ||||| |||| ||| || || || || || ||||| ||||| | Sbjct 37006 CTTCACATTCTCGATCGTATCCGACGCTTCCACCTCCAGTGTTATAGTTTTGCCAGTAAG 36947 Query 172049 TGTTTTAATGAATATCTGCAT 172069 ||| |||| || |||||||| Sbjct 36946 TGTCTTAACAAAAATCTGCAT 36926 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| ||||| |||| || ||| || || ||||| |||||||| ||||| || ||||| Sbjct 36325 ACCGGCAAAGATTAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTTGGC 36266 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 || ||||| || ||||| || | || ||||| | ||||| ||||||||||| | Sbjct 36265 CTTAACATTCTCGATGGTATCAGATGCCTCCACTTCCAATGTAATTGTTTTACCAGTAAG 36206 Query 172049 TGTTTTAATGAATATCTGCAT 172069 ||||| | || || ||||| Sbjct 36205 AGTTTTTACAAAAATTTGCAT 36185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905044603892400