Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq271 105 5e-18 seq100 96.9 3e-15 seq1199 87.8 1e-12 >seq271 Length=49288 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| | ||||| | |||||||| || |||||||||||||| ||||||| |||| | Sbjct 35918 CCAGCAAAAATCAAGCGCTGCTGATCTGGTGGAATACCCTCTTTATCTTGTATTTTTGCT 35859 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| |||| | ||||| ||| ||| |||||||| || || || || || || || Sbjct 35858 TTCACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGGGTGATCGTCTTTCCCGTCAAT 35799 Query 29767 GTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || Sbjct 35798 GTCTTTACGAAGATTTGCATGTT 35776 >seq100 Length=72284 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 29661 TCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTA 29719 || ||| ||||| |||||||| |||||||| || || |||||| | || ||| | || | Sbjct 23685 TCGTTGTTGATCAGGCGGAATGCCCTCTTTATCCTG-AATTTTAGCCTTTACATTCTCAA 23627 Query 29720 CAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATA 29779 ||| ||||| ||| || ||||| || || ||||| |||||||| || || || |||| Sbjct 23626 TAGTATCAGACGATTCCACCTCAAGGGTGATTGTTTTTCCAGTTAATGTCTTCACGAATA 23567 Query 29780 TCTGCATTTT 29789 |||||||||| Sbjct 23566 TCTGCATTTT 23557 >seq1199 Length=19938 Score = 87.8 bits (96), Expect = 1e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGT 29714 ||||| | |||||||| || || || ||||||||||| || ||| |||| ||| ||| | Sbjct 15180 ATCAAACGCTGCTGATCTGGAGGTATGCCCTCTTTGTCCTG-AATCTTTGCTTTCACATT 15238 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 || | || || || ||| || ||||| || || || || ||||| || |||||||| Sbjct 15239 CTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATCGTCTTACCAGTCAATGTTTTAAC 15298 Query 29775 AAATATCTGCAT 29786 |||||| ||||| Sbjct 15299 AAATATTTGCAT 15310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385181274928998