Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq24 147 2e-29 seq467 134 1e-25 >seq24 Length=111638 Score = 147 bits (162), Expect = 2e-29 Identities = 256/370 (69%), Gaps = 7/370 (2%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || ||||| || |||| |||||| || || ||||| || || || | || || Sbjct 54110 TTTTTGTCTAGACCGTAAGCAATAGCAGCCGCTGTCGGTTCGTTGATGATACGTAAGACG 54051 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||| |||||| || | |||||| || ||||||| ||||| |||||||| || Sbjct 54050 TTCAGACCCGCAATTGCGCCAGAATCTTTGGTCGCTTGTCGCTGTGAGTCGTTAAAGTAC 53991 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || || ||||| ||||| | || | | || | | | || || |||| Sbjct 53990 GCGGGGACTGTGATAACCGCATCCTTGACCGCATGACCGAGAAATGCCTCAGCCGTTTCC 53931 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG--AATATTGCTTGGATTCAT 282569 ||||||||| | || ||| |||||||||| |||||| | || || || | || Sbjct 53930 TTCATTTTAACCAGAACCATAGATGAAATTTCTTCTGGCGTGAAGGTT--TTTGTCTCGC 53873 Query 282570 TTTGATATGATACTTCAAAATATGGTTTATTACCAACA---TTAATAACTTTAAATGGCC 282626 || |||| || | | | ||||||| |||| || || || ||||| ||||||| Sbjct 53872 CTTTATATTCAACCTGCACTTTTGGTTTACCACCACCAGCGTTCATGACTTTGAATGGCC 53813 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 | | ||||||||||| || || | |||| ||| | | ||| || |||||||| | Sbjct 53812 AGTGCTTCATATCTGACTGTACCGATGCATCATCAAATTTACGACCGATCAATCGTTTAG 53753 Query 282687 CATCAAAAAT 282696 |||| |||| Sbjct 53752 CATCTGAAAT 53743 Score = 141 bits (156), Expect = 7e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| | ||||||||||| |||||| |||||||||||||| || |||| | ||| Sbjct 49026 TTTTTATCTAAACCATACGCAATAGCAGCTGCAGTTGGTTCATTGATGATTCGGAGAACG 48967 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| ||| ||||||||||| ||||||| ||| |||||||||||||| Sbjct 48966 TTCAGGCCAGCAATGGCTCCCGCATCTTTAGTTGCTTGTCGTTGAGAATCGTTAAAATAA 48907 Query 282452 GCAGGAACAGTAATAACGGCATC 282474 || || || || | |||||||| Sbjct 48906 GCTGGCACGGTTACTACGGCATC 48884 >seq467 Length=38392 Score = 134 bits (148), Expect = 1e-25 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||| ||| || ||||| | || || || | ||| ||||| || |||||||| ||||| Sbjct 32924 TTGCCTTCCTTCTTATCCAAGCCGTAAGCGATAGCGGCAGCCGTAGGTTCATTGATAATA 32865 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | | |||||| ||||| ||||| | || ||||||||||| ||||| | ||| | ||| Sbjct 32864 CGGACAACATTGAGACCGGCAATAGTACCAGCATCTTTAGTAGCTTGACGTTGAGCATCA 32805 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 ||||| || ||||| || || | ||| |||| | | ||||| ||||| | ||| || Sbjct 32804 TTAAAGTAAGCAGGTACCGTGACAACCGCATGTTTCACTTCCTTTCCCAAATATGCTTCA 32745 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 || ||| ||||||||| | | || ||||| ||| || | ||| |||| Sbjct 32744 GCAATTTCTTTCATTTTTCCGAGAACCATTGCTGATATCTCTTCAGGAG 32696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740233804337628