Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq271 132 9e-26 seq1199 109 1e-18 seq100 98.7 2e-15 >seq271 Length=49288 Score = 132 bits (146), Expect = 9e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || || ||||| || || | || |||||||| || |||||||| || || |||||| Sbjct 36740 TGCTTACCGGCAAAAATAAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATC 36681 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || ||||||||||||||||| ||| || || ||||| | ||| |||||||||||| Sbjct 36680 TTGGCCTTTACATTTTCAATCGTGTCAGAAGCCTCAACTTCTAGAGTGATCGTCTTGCCT 36621 Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| ||||| || ||||| Sbjct 36620 GTTAACGTCTTCACAAAAATTTGCAT 36595 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | | || |||||||| || || || || |||||||| || |||||| Sbjct 35918 CCAGCAAAAATCAAGCGCTGCTGATCTGGTGGAATACCCTCTTTATCTTGTATTTTTGCT 35859 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||||||||| || || ||| ||||| | || |||||||| || ||||| Sbjct 35858 TTCACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGGGTGATCGTCTTTCCCGTCAAT 35799 Query 82791 GTCTTTACAAATATCTGCAT 82810 |||||||| || || ||||| Sbjct 35798 GTCTTTACGAAGATTTGCAT 35779 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||||||||||| || |||||||| || |||||||||||||| || || || || Sbjct 36324 CCGGCAAAGATTAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTTGGCC 36265 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || || |||||| | || |||||||| || || || || || || | Sbjct 36264 TTAACATTCTCGATGGTATCAGATGCCTCCACTTCCAATGTAATTGTTTTACCAGTAAGA 36205 Query 82791 GTCTTTACAAATATCTGCAT 82810 || |||||||| || ||||| Sbjct 36204 GTTTTTACAAAAATTTGCAT 36185 >seq1199 Length=19938 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || |||||||||||||| || || || || |||||||||||||| ||||| ||||||||| Sbjct 15189 TGCTGATCTGGAGGTATGCCCTCTTTGTCCTGAATCTTTGCTTTCACATTCTCAATCGTA 15248 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || | ||| || || | || |||||||| || ||||| || || |||||||| ||| Sbjct 15249 TCCGAGGATTCGACCTCAAGCGTAATCGTCTTACCAGTCAATGTTTTAACAAATATTTGC 15308 Query 82809 ATTAT 82813 || || Sbjct 15309 ATAAT 15313 >seq100 Length=72284 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || || |||| ||||||||| || || || || || ||||| ||||| || Sbjct 23702 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGCGGAATGCCCTCTTTATCCTGAATTTTA 23643 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||||||| ||||| |||||| | ||| || || | || || || || || || Sbjct 23642 GCCTTTACATTCTCAATAGTATCAGACGATTCCACCTCAAGGGTGATTGTTTTTCCAGTT 23583 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 || ||||| || |||||||||||| Sbjct 23582 AATGTCTTCACGAATATCTGCATT 23559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981725581498442