Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq271 86.0 5e-12 seq349 84.2 2e-11 >seq271 Length=49288 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27102 TGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATC 27161 || |||||||| |||| |||||||| ||||| || || | || ||||| || ||| Sbjct 36740 TGCTTACCGGCAAAAATAAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATC 36681 Query 27162 TTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCC 27221 ||| || | |||| | ||||| | || |||||||||||||| || | ||||| Sbjct 36680 TTGGCCTTTACATTTTCAATCGTGTCAGAAGCCTCAACTTCTAGAGTGATCGTCTTGCCT 36621 Query 27222 GTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||||||| ||||||||| Sbjct 36620 GTTAACGTCTTCACAAAAATTTGCATA 36594 >seq349 Length=44324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 131577 TTTGGCCAAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGC 131636 ||| ||| ||||| ||||| ||| ||||| ||||||||||| ||||| || Sbjct 27294 TTTCGCCCCACGAATCTTCCAAGCCGGGGCATTCAGCGGGACACATTAATGACCATACTT 27235 Query 131637 ---CGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGAT 131693 ||| || || |||| ||| || | |||||||||||| || || | |||| || Sbjct 27234 TATCGTCGCGTACA---CGCTCCATGAAAAGATCCGGCACCCACAAACCGAAGAACAAAT 27178 Query 131694 CTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGT 131753 | | | || ||| ||||| | | ||| || | ||||||||| ||||| | Sbjct 27177 CACGACAGCGTTCAAGTTCATCACCCACATTCTTTCGCAGTTCTAAAAAGTCGAAAATAT 27118 Query 131754 CCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCT 131791 |||||||||| ||||||||||| | || | ||||||| Sbjct 27117 CCGCATGCCACGGTTCCAAATAAATGGCAAATGCGCCT 27080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424892564942736