Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq271 141 1e-28 seq1199 113 5e-20 seq100 98.7 1e-15 >seq271 Length=49288 Score = 141 bits (156), Expect = 1e-28 Identities = 119/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| |||||| | || |||||||| || ||||| || |||||| | | Sbjct 36595 ATGCAAATTTTTGTGAAGACGTTAACAGGCAAGACGATCACTCTAGAAGTTGAGGCTTCT 36654 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || ||||||||||| || |||||||| ||||| ||| Sbjct 36655 GACACGATTGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 36714 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 |||||||| |||||||| |||||||| Sbjct 36715 CAGCGTCTTATTTTTGCCGGTAAGCA 36740 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| || || ||||| || || | Sbjct 35779 ATGCAAATCTTCGTAAAGACATTGACGGGAAAGACGATCACCCTTGAAGTGGAAGCTTCA 35838 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| |||| || ||||| || || || ||||| ||||| ||||| ||| Sbjct 35839 GACACGATTGAAAATGTGAAAGCAAAAATACAAGATAAAGAGGGTATTCCACCAGATCAG 35898 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | ||||||||||||| Sbjct 35899 CAGCGCTTGATTTTTGCTGGTA 35920 >seq1199 Length=19938 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| ||||| || || | || || ||||| ||||| |||||||| || || Sbjct 15313 ATTATGCAAATATTTGTTAAAACATTGACTGGTAAGACGATTACGCTTGAGGTCGAATCC 15254 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| |||| ||| |||| || || ||||||||||| ||||| || |||||||| Sbjct 15253 TCGGATACGATTGAGAATGTGAAAGCAAAGATTCAGGACAAAGAGGGCATACCTCCAGAT 15194 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTA 27547 ||||||||| | ||||| || |||| Sbjct 15193 CAGCAGCGTTTGATTTTCGCAGGTA 15169 >seq100 Length=72284 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||| | || || || || || || |||||||| || || Sbjct 23559 AATGCAGATATTCGTGAAGACATTAACTGGAAAAACAATCACCCTTGAGGTGGAATCGTC 23618 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| ||| | ||||||||||||||||| || ||||| ||||| || || || Sbjct 23619 TGATACTATTGAGAATGTAAAGGCTAAAATTCAGGATAAAGAGGGCATTCCGCCTGATCA 23678 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 || || || ||||| || ||||| Sbjct 23679 ACAACGACTTATTTTCGCAGGTAA 23702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570252812907360