Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq271 123 5e-23 seq1199 104 5e-17 seq100 96.9 7e-15 >seq271 Length=49288 Score = 123 bits (136), Expect = 5e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| ||||| || || || || ||||||||||| || ||||| || |||||| Sbjct 35918 CCAGCAAAAATCAAGCGCTGCTGATCTGGTGGAATACCCTCTTTATCTTGTATTTTTGCT 35859 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || ||||| |||||||| ||||| || ||||||||||| |||||||| Sbjct 35858 TTCACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGGGTGATCGTCTTTCCCGTCAAT 35799 Query 283080 GTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| || ||||| || Sbjct 35798 GTCTTTACGAAGATTTGCATGTT 35776 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || |||||||| || | ||| || || || ||||| || || ||||| || ||| Sbjct 36740 TGCTTACCGGCAAAAATAAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATC 36681 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || || ||||| | || || ||||| ||||| || ||||| |||||||||||||| || Sbjct 36680 TTGGCCTTTACATTTTCAATCGTGTCAGAAGCCTCAACTTCTAGAGTGATCGTCTTGCCT 36621 Query 283074 GTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || || ||||| Sbjct 36620 GTTAACGTCTTCACAAAAATTTGCAT 36595 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| |||||||| ||||| || ||||| ||| || ||||||||||| || | Sbjct 37679 CCACCACGAAGGCGAAGAACCAGGTGCAACGTCGATTCCTTCTGGATGTTGTAATCCGAT 37620 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 |||||||| || || || |||||||| || |||| Sbjct 37619 AGCGTGCGACCGTCTTCCAGTTGTTTTCCAGCAA 37586 >seq1199 Length=19938 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || || |||||||| || || || || || ||||| ||||| || ||||||||| Sbjct 15171 CCTGCGAAAATCAAACGCTGCTGATCTGGAGGTATGCCCTCTTTGTCCTGAATCTTTGCT 15230 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || || ||||| | |||||| || || || ||||||||||| ||||| Sbjct 15231 TTCACATTCTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATCGTCTTACCAGTCAAT 15290 Query 283080 GTCTTAACGAATATCTGCAT 283099 || ||||| ||||| ||||| Sbjct 15291 GTTTTAACAAATATTTGCAT 15310 >seq100 Length=72284 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || || || | |||||||| ||| |||||| ||||| || || || || || Sbjct 23702 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGCGGAATGCCCTCTTTATCCTGAATTTTA 23643 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || ||||| | || ||||| || || | ||| || || || ||||| || || || || Sbjct 23642 GCCTTTACATTCTCAATAGTATCAGACGATTCCACCTCAAGGGTGATTGTTTTTCCAGTT 23583 Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102 || ||||| ||||||||||||||||| Sbjct 23582 AATGTCTTCACGAATATCTGCATTTT 23557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046630863147012